Hb_005116_150

Information

Type -
Description -
Location Contig5116: 150631-151979
Sequence    

Annotation

kegg
ID rcu:RCOM_0557800
description cyclin-dependent protein kinase, putative
nr
ID XP_012092244.1
description PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
swissprot
ID Q75HV0
description Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1
trembl
ID A0A067JPJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21930 PE=4 SV=1
Gene Ontology
ID GO:0019901
description cyclin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46357: 150601-152009
cDNA
(Sanger)
(ID:Location)		 031_G18.ab1: 150618-151780 , 039_P10.ab1: 150601-151121 , 045_P07.ab1: 150618-151775

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_150 0.0 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
2 Hb_007760_020 0.0637136917 - - PREDICTED: expansin-A1 [Populus euphratica]
3 Hb_009151_010 0.076588468 - - Peroxidase 3 [Morus notabilis]
4 Hb_000531_030 0.0840833433 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007113_060 0.0858949613 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
6 Hb_002311_030 0.0891346759 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010142_060 0.096572767 - - Blue copper protein precursor, putative [Ricinus communis]
8 Hb_001269_180 0.0984162571 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_031984_020 0.1021535758 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004162_200 0.1023761673 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
11 Hb_005440_040 0.1038634077 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
12 Hb_006922_120 0.1067155338 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
13 Hb_057862_010 0.1067220738 - - protein binding protein, putative [Ricinus communis]
14 Hb_132381_010 0.1080341682 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_006717_060 0.1087864992 - - PREDICTED: peroxidase 42 [Jatropha curcas]
16 Hb_004020_030 0.1093718723 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
17 Hb_002471_130 0.1105552699 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
18 Hb_006846_040 0.1108901112 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
19 Hb_002067_070 0.1109247006 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
20 Hb_000009_280 0.1112464899 - - Calmodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_005116_150 Hb_005116_150 Hb_007760_020 Hb_007760_020 Hb_005116_150--Hb_007760_020 Hb_009151_010 Hb_009151_010 Hb_005116_150--Hb_009151_010 Hb_000531_030 Hb_000531_030 Hb_005116_150--Hb_000531_030 Hb_007113_060 Hb_007113_060 Hb_005116_150--Hb_007113_060 Hb_002311_030 Hb_002311_030 Hb_005116_150--Hb_002311_030 Hb_010142_060 Hb_010142_060 Hb_005116_150--Hb_010142_060 Hb_007760_020--Hb_009151_010 Hb_007760_020--Hb_010142_060 Hb_001534_140 Hb_001534_140 Hb_007760_020--Hb_001534_140 Hb_009252_070 Hb_009252_070 Hb_007760_020--Hb_009252_070 Hb_007760_020--Hb_000531_030 Hb_009151_010--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_009151_010--Hb_004162_200 Hb_002067_070 Hb_002067_070 Hb_009151_010--Hb_002067_070 Hb_009151_010--Hb_007113_060 Hb_009151_010--Hb_000531_030 Hb_001104_060 Hb_001104_060 Hb_000531_030--Hb_001104_060 Hb_005440_040 Hb_005440_040 Hb_000531_030--Hb_005440_040 Hb_000227_360 Hb_000227_360 Hb_000531_030--Hb_000227_360 Hb_001456_030 Hb_001456_030 Hb_000531_030--Hb_001456_030 Hb_006922_120 Hb_006922_120 Hb_007113_060--Hb_006922_120 Hb_000816_140 Hb_000816_140 Hb_007113_060--Hb_000816_140 Hb_007113_060--Hb_005440_040 Hb_007113_060--Hb_002311_030 Hb_007113_060--Hb_004162_200 Hb_162450_010 Hb_162450_010 Hb_007113_060--Hb_162450_010 Hb_002311_030--Hb_004162_200 Hb_002740_140 Hb_002740_140 Hb_002311_030--Hb_002740_140 Hb_057862_010 Hb_057862_010 Hb_002311_030--Hb_057862_010 Hb_002311_030--Hb_162450_010 Hb_010142_060--Hb_001534_140 Hb_004531_160 Hb_004531_160 Hb_010142_060--Hb_004531_160 Hb_000676_230 Hb_000676_230 Hb_010142_060--Hb_000676_230 Hb_000368_050 Hb_000368_050 Hb_010142_060--Hb_000368_050 Hb_004032_290 Hb_004032_290 Hb_010142_060--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_010142_060--Hb_000395_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.595941 1.63606 19.8832 82.1431 0.0428305 0.0826946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0505502 0.159031 0 2.35018 28.9592

CAGE analysis