Hb_005116_160

Information

Type transcription factor
Description TF Family: TRAF
Location Contig5116: 152596-163477
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46358: 152367-155916 , PASA_asmbl_46359: 156815-157930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_160 0.0 transcription factor TF Family: TRAF -
2 Hb_000684_470 0.0511506726 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
3 Hb_000699_030 0.0676157615 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
4 Hb_000732_010 0.0695006483 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
5 Hb_001307_220 0.0707084394 - - PREDICTED: glutathione S-transferase omega-like 2 [Jatropha curcas]
6 Hb_001369_730 0.0711416965 - - F5O11.10, putative isoform 1 [Theobroma cacao]
7 Hb_005463_100 0.0745411612 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
8 Hb_000883_020 0.0745980261 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
9 Hb_009486_140 0.0780387721 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
10 Hb_156279_020 0.0796667919 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
11 Hb_000317_050 0.0804476845 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
12 Hb_167498_010 0.0810763969 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
13 Hb_000331_550 0.0815965897 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
14 Hb_000318_250 0.0823179425 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
15 Hb_005271_220 0.0831842278 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
16 Hb_017358_030 0.0839685854 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
17 Hb_005054_230 0.0841968594 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
18 Hb_000708_030 0.0849154785 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
19 Hb_001409_020 0.0852057782 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
20 Hb_003001_080 0.0852600265 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]

Gene co-expression network

sample Hb_005116_160 Hb_005116_160 Hb_000684_470 Hb_000684_470 Hb_005116_160--Hb_000684_470 Hb_000699_030 Hb_000699_030 Hb_005116_160--Hb_000699_030 Hb_000732_010 Hb_000732_010 Hb_005116_160--Hb_000732_010 Hb_001307_220 Hb_001307_220 Hb_005116_160--Hb_001307_220 Hb_001369_730 Hb_001369_730 Hb_005116_160--Hb_001369_730 Hb_005463_100 Hb_005463_100 Hb_005116_160--Hb_005463_100 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_156279_020 Hb_156279_020 Hb_000684_470--Hb_156279_020 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_000684_470--Hb_005463_100 Hb_009767_110 Hb_009767_110 Hb_000684_470--Hb_009767_110 Hb_000708_030 Hb_000708_030 Hb_000699_030--Hb_000708_030 Hb_000327_270 Hb_000327_270 Hb_000699_030--Hb_000327_270 Hb_007007_120 Hb_007007_120 Hb_000699_030--Hb_007007_120 Hb_005489_020 Hb_005489_020 Hb_000699_030--Hb_005489_020 Hb_003680_120 Hb_003680_120 Hb_000699_030--Hb_003680_120 Hb_002232_410 Hb_002232_410 Hb_000732_010--Hb_002232_410 Hb_065525_040 Hb_065525_040 Hb_000732_010--Hb_065525_040 Hb_000331_550 Hb_000331_550 Hb_000732_010--Hb_000331_550 Hb_002205_110 Hb_002205_110 Hb_000732_010--Hb_002205_110 Hb_000732_010--Hb_000708_030 Hb_001205_240 Hb_001205_240 Hb_000732_010--Hb_001205_240 Hb_000317_050 Hb_000317_050 Hb_001307_220--Hb_000317_050 Hb_000318_250 Hb_000318_250 Hb_001307_220--Hb_000318_250 Hb_001546_080 Hb_001546_080 Hb_001307_220--Hb_001546_080 Hb_001307_220--Hb_000684_470 Hb_002184_110 Hb_002184_110 Hb_001307_220--Hb_002184_110 Hb_167498_010 Hb_167498_010 Hb_001369_730--Hb_167498_010 Hb_000329_470 Hb_000329_470 Hb_001369_730--Hb_000329_470 Hb_001409_020 Hb_001409_020 Hb_001369_730--Hb_001409_020 Hb_001198_100 Hb_001198_100 Hb_001369_730--Hb_001198_100 Hb_001369_730--Hb_000732_010 Hb_004800_080 Hb_004800_080 Hb_001369_730--Hb_004800_080 Hb_005463_100--Hb_002046_180 Hb_012019_010 Hb_012019_010 Hb_005463_100--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_005463_100--Hb_002110_150 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_005463_100--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.66802 4.2099 3.7732 3.13469 4.65491 4.16989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37623 4.99844 5.0612 3.11878 4.92245

CAGE analysis