Hb_005129_050

Information

Type -
Description -
Location Contig5129: 39035-47241
Sequence    

Annotation

kegg
ID rcu:RCOM_0523120
description Proliferating-cell nucleolar antigen p120, putative
nr
ID XP_012071412.1
description PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
swissprot
ID P46087
description Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase OS=Homo sapiens GN=NOP2 PE=1 SV=2
trembl
ID A0A067L2S2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05126 PE=4 SV=1
Gene Ontology
ID GO:0003723
description probable 28s rrna (cytosine -c )-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46387: 40785-47089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005129_050 0.0 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
2 Hb_001301_210 0.0584252976 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
3 Hb_001278_060 0.0652595106 - - nucleotide binding protein, putative [Ricinus communis]
4 Hb_002883_010 0.0658580209 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
5 Hb_001433_190 0.0680089687 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
6 Hb_007668_020 0.0721280612 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
7 Hb_001196_070 0.0737428891 - - nucleolar protein nop56, putative [Ricinus communis]
8 Hb_005000_270 0.0748022186 - - unnamed protein product [Vitis vinifera]
9 Hb_000035_400 0.0782473771 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
10 Hb_001437_100 0.0810922476 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
11 Hb_000230_370 0.0812291908 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
12 Hb_000244_240 0.0836081739 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000136_150 0.0838282731 - - hypothetical protein VITISV_038366 [Vitis vinifera]
14 Hb_000317_440 0.0839980253 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
15 Hb_000805_310 0.0844456142 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
16 Hb_024990_010 0.0860788958 - - PREDICTED: la protein 1 [Jatropha curcas]
17 Hb_004881_050 0.0866284619 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
18 Hb_000239_070 0.0872748528 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
19 Hb_006002_030 0.090193244 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
20 Hb_000213_070 0.0904972154 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005129_050 Hb_005129_050 Hb_001301_210 Hb_001301_210 Hb_005129_050--Hb_001301_210 Hb_001278_060 Hb_001278_060 Hb_005129_050--Hb_001278_060 Hb_002883_010 Hb_002883_010 Hb_005129_050--Hb_002883_010 Hb_001433_190 Hb_001433_190 Hb_005129_050--Hb_001433_190 Hb_007668_020 Hb_007668_020 Hb_005129_050--Hb_007668_020 Hb_001196_070 Hb_001196_070 Hb_005129_050--Hb_001196_070 Hb_000120_510 Hb_000120_510 Hb_001301_210--Hb_000120_510 Hb_001301_210--Hb_002883_010 Hb_000244_240 Hb_000244_240 Hb_001301_210--Hb_000244_240 Hb_000230_370 Hb_000230_370 Hb_001301_210--Hb_000230_370 Hb_001396_290 Hb_001396_290 Hb_001301_210--Hb_001396_290 Hb_006002_030 Hb_006002_030 Hb_001278_060--Hb_006002_030 Hb_001278_060--Hb_007668_020 Hb_000213_070 Hb_000213_070 Hb_001278_060--Hb_000213_070 Hb_001278_060--Hb_001433_190 Hb_078477_040 Hb_078477_040 Hb_001278_060--Hb_078477_040 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_001433_190--Hb_002883_010 Hb_007849_020 Hb_007849_020 Hb_001433_190--Hb_007849_020 Hb_001433_190--Hb_001196_070 Hb_001433_190--Hb_006002_030 Hb_007668_020--Hb_000213_070 Hb_003581_020 Hb_003581_020 Hb_007668_020--Hb_003581_020 Hb_003716_020 Hb_003716_020 Hb_007668_020--Hb_003716_020 Hb_000199_080 Hb_000199_080 Hb_007668_020--Hb_000199_080 Hb_001196_070--Hb_001278_060 Hb_125092_020 Hb_125092_020 Hb_001196_070--Hb_125092_020 Hb_001196_070--Hb_000120_510 Hb_001196_070--Hb_001301_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.3195 25.4338 13.8415 13.7604 74.8333 104.313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4973 17.7527 17.0543 28.9707 17.805

CAGE analysis