Hb_005137_020

Information

Type -
Description -
Location Contig5137: 31804-60838
Sequence    

Annotation

kegg
ID rcu:RCOM_0602850
description Polyneuridine-aldehyde esterase precursor, putative (EC:3.1.1.78)
nr
ID XP_012701528.1
description PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
swissprot
ID Q8S9K8
description Methylesterase 10 OS=Arabidopsis thaliana GN=MES10 PE=2 SV=1
trembl
ID A0A0E0N7B2
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0050529
description methylesterase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46396: 40275-41485 , PASA_asmbl_46397: 43710-43853 , PASA_asmbl_46398: 46216-47279
cDNA
(Sanger)
(ID:Location)		 025_I19.ab1: 40275-41288

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005137_020 0.0 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
2 Hb_000544_110 0.0530811973 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
3 Hb_072912_020 0.0765867744 - - abhydrolase domain containing, putative [Ricinus communis]
4 Hb_078633_010 0.0906002835 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_005908_040 0.0927029224 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
6 Hb_001102_250 0.1019302914 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
7 Hb_004297_040 0.1020588406 - - acyl CoA reductase [Hevea brasiliensis]
8 Hb_103752_010 0.1062824565 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
9 Hb_008066_040 0.1085376193 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
10 Hb_010172_100 0.1252291139 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
11 Hb_001268_080 0.1258592612 - - catalytic, putative [Ricinus communis]
12 Hb_002045_230 0.1263835376 - - Ammonium transporter 2 [Theobroma cacao]
13 Hb_000367_280 0.1380226296 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
14 Hb_000175_130 0.1399910878 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
15 Hb_002326_180 0.1413024303 - - Protein Z, putative [Ricinus communis]
16 Hb_005615_070 0.1417487011 - - Rab7 [Hevea brasiliensis]
17 Hb_003095_070 0.1443985615 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
18 Hb_011245_020 0.14526127 - - Ferrochelatase [Medicago truncatula]
19 Hb_001213_120 0.1461146887 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
20 Hb_001922_080 0.146610198 - - Tellurite resistance protein tehA, putative [Ricinus communis]

Gene co-expression network

sample Hb_005137_020 Hb_005137_020 Hb_000544_110 Hb_000544_110 Hb_005137_020--Hb_000544_110 Hb_072912_020 Hb_072912_020 Hb_005137_020--Hb_072912_020 Hb_078633_010 Hb_078633_010 Hb_005137_020--Hb_078633_010 Hb_005908_040 Hb_005908_040 Hb_005137_020--Hb_005908_040 Hb_001102_250 Hb_001102_250 Hb_005137_020--Hb_001102_250 Hb_004297_040 Hb_004297_040 Hb_005137_020--Hb_004297_040 Hb_000544_110--Hb_072912_020 Hb_000544_110--Hb_001102_250 Hb_000544_110--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040 Hb_000544_110--Hb_005908_040 Hb_072912_020--Hb_001102_250 Hb_072912_020--Hb_078633_010 Hb_072912_020--Hb_004297_040 Hb_001268_080 Hb_001268_080 Hb_072912_020--Hb_001268_080 Hb_078633_010--Hb_001268_080 Hb_001213_120 Hb_001213_120 Hb_078633_010--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_078633_010--Hb_000367_280 Hb_010172_100 Hb_010172_100 Hb_005908_040--Hb_010172_100 Hb_005908_040--Hb_001102_250 Hb_005908_040--Hb_004297_040 Hb_003095_070 Hb_003095_070 Hb_005908_040--Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_001102_250--Hb_004297_040 Hb_004297_040--Hb_000367_280 Hb_004297_040--Hb_001213_120 Hb_004297_040--Hb_078633_010 Hb_004297_040--Hb_001268_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3266 0.408613 0.419827 3.32879 3.87799 7.66742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0178 47.8023 21.0624 1.77209 0.2083

CAGE analysis