Hb_005137_030

Information

Type -
Description -
Location Contig5137: 60934-62790
Sequence    

Annotation

kegg
ID rcu:RCOM_0603100
description hypothetical protein
nr
ID XP_002522351.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8N2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0603100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46400: 61098-62799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005137_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011798_030 0.2635387826 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Vitis vinifera]
3 Hb_184520_010 0.281697464 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_133385_010 0.2972881232 - - -
5 Hb_000105_030 0.2989539097 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
6 Hb_000940_160 0.2998218525 - - hypothetical protein VITISV_017596 [Vitis vinifera]
7 Hb_053125_010 0.3072997023 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
8 Hb_000130_070 0.3129936616 - - hypothetical protein JCGZ_14738 [Jatropha curcas]
9 Hb_113203_010 0.3130023344 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_002851_080 0.3149542818 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
11 Hb_157029_010 0.3173253864 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
12 Hb_008948_160 0.3201360246 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
13 Hb_102011_010 0.3209782913 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_004570_030 0.3226382545 - - conserved hypothetical protein [Ricinus communis]
15 Hb_143986_010 0.3237119864 - - PREDICTED: beta-galactosidase [Jatropha curcas]
16 Hb_134279_010 0.3241451124 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
17 Hb_000631_110 0.3251384809 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
18 Hb_155256_020 0.3260274918 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
19 Hb_000959_090 0.3311597009 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002805_130 0.3320481476 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005137_030 Hb_005137_030 Hb_011798_030 Hb_011798_030 Hb_005137_030--Hb_011798_030 Hb_184520_010 Hb_184520_010 Hb_005137_030--Hb_184520_010 Hb_133385_010 Hb_133385_010 Hb_005137_030--Hb_133385_010 Hb_000105_030 Hb_000105_030 Hb_005137_030--Hb_000105_030 Hb_000940_160 Hb_000940_160 Hb_005137_030--Hb_000940_160 Hb_053125_010 Hb_053125_010 Hb_005137_030--Hb_053125_010 Hb_122273_020 Hb_122273_020 Hb_011798_030--Hb_122273_020 Hb_118157_010 Hb_118157_010 Hb_011798_030--Hb_118157_010 Hb_000345_330 Hb_000345_330 Hb_011798_030--Hb_000345_330 Hb_003895_040 Hb_003895_040 Hb_011798_030--Hb_003895_040 Hb_011798_030--Hb_000940_160 Hb_005754_030 Hb_005754_030 Hb_011798_030--Hb_005754_030 Hb_001157_100 Hb_001157_100 Hb_184520_010--Hb_001157_100 Hb_002666_020 Hb_002666_020 Hb_184520_010--Hb_002666_020 Hb_003805_060 Hb_003805_060 Hb_184520_010--Hb_003805_060 Hb_012788_010 Hb_012788_010 Hb_184520_010--Hb_012788_010 Hb_069033_010 Hb_069033_010 Hb_184520_010--Hb_069033_010 Hb_184520_010--Hb_053125_010 Hb_001821_130 Hb_001821_130 Hb_133385_010--Hb_001821_130 Hb_155256_020 Hb_155256_020 Hb_133385_010--Hb_155256_020 Hb_002805_130 Hb_002805_130 Hb_133385_010--Hb_002805_130 Hb_006132_020 Hb_006132_020 Hb_133385_010--Hb_006132_020 Hb_001625_030 Hb_001625_030 Hb_133385_010--Hb_001625_030 Hb_007234_010 Hb_007234_010 Hb_133385_010--Hb_007234_010 Hb_000631_110 Hb_000631_110 Hb_000105_030--Hb_000631_110 Hb_014497_020 Hb_014497_020 Hb_000105_030--Hb_014497_020 Hb_011609_150 Hb_011609_150 Hb_000105_030--Hb_011609_150 Hb_003211_040 Hb_003211_040 Hb_000105_030--Hb_003211_040 Hb_000175_120 Hb_000175_120 Hb_000105_030--Hb_000175_120 Hb_008948_160 Hb_008948_160 Hb_000105_030--Hb_008948_160 Hb_011791_020 Hb_011791_020 Hb_000940_160--Hb_011791_020 Hb_000117_070 Hb_000117_070 Hb_000940_160--Hb_000117_070 Hb_002942_110 Hb_002942_110 Hb_000940_160--Hb_002942_110 Hb_143986_010 Hb_143986_010 Hb_000940_160--Hb_143986_010 Hb_020178_050 Hb_020178_050 Hb_000940_160--Hb_020178_050 Hb_120470_010 Hb_120470_010 Hb_000940_160--Hb_120470_010 Hb_001485_010 Hb_001485_010 Hb_053125_010--Hb_001485_010 Hb_102011_010 Hb_102011_010 Hb_053125_010--Hb_102011_010 Hb_167977_010 Hb_167977_010 Hb_053125_010--Hb_167977_010 Hb_151706_010 Hb_151706_010 Hb_053125_010--Hb_151706_010 Hb_147218_010 Hb_147218_010 Hb_053125_010--Hb_147218_010 Hb_065500_010 Hb_065500_010 Hb_053125_010--Hb_065500_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.360724 0.0668187 0 0.119941 0.303281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.136065 0.349878 0.150583

CAGE analysis