Hb_005137_050

Information

Type -
Description -
Location Contig5137: 71702-75963
Sequence    

Annotation

kegg
ID cic:CICLE_v10025487mg
description hypothetical protein
nr
ID XP_012079149.1
description PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
swissprot
ID Q8RWH9
description Nuclear pore complex protein NUP58 OS=Arabidopsis thaliana GN=NUP58 PE=1 SV=1
trembl
ID A0A067K6J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12322 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup58

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46405: 71835-72116 , PASA_asmbl_46406: 72952-74465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005137_050 0.0 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
2 Hb_152175_010 0.0602955081 - - Protein grpE, putative [Ricinus communis]
3 Hb_001247_130 0.0688360269 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
4 Hb_002411_030 0.0719812153 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
5 Hb_032208_040 0.0759631142 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
6 Hb_000061_470 0.078690018 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
7 Hb_000130_240 0.0798281272 - - hypothetical protein RCOM_1520720 [Ricinus communis]
8 Hb_000308_030 0.0820259335 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
9 Hb_142368_010 0.0827821814 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
10 Hb_001728_050 0.0845155314 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
11 Hb_111198_010 0.0854458825 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
12 Hb_000402_080 0.0861098504 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
13 Hb_000563_230 0.0864492537 - - phospholipase d zeta, putative [Ricinus communis]
14 Hb_077562_050 0.0874409387 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
15 Hb_002675_260 0.0880624178 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
16 Hb_000803_070 0.0884682626 - - PREDICTED: protein TRAUCO [Jatropha curcas]
17 Hb_003001_080 0.089343513 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
18 Hb_000866_410 0.0898520811 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
19 Hb_000181_110 0.0899102168 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
20 Hb_020367_050 0.0914245406 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005137_050 Hb_005137_050 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_001247_130 Hb_001247_130 Hb_005137_050--Hb_001247_130 Hb_002411_030 Hb_002411_030 Hb_005137_050--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_005137_050--Hb_032208_040 Hb_000061_470 Hb_000061_470 Hb_005137_050--Hb_000061_470 Hb_000130_240 Hb_000130_240 Hb_005137_050--Hb_000130_240 Hb_003001_080 Hb_003001_080 Hb_152175_010--Hb_003001_080 Hb_000563_230 Hb_000563_230 Hb_152175_010--Hb_000563_230 Hb_002890_290 Hb_002890_290 Hb_152175_010--Hb_002890_290 Hb_001227_030 Hb_001227_030 Hb_152175_010--Hb_001227_030 Hb_142368_010 Hb_142368_010 Hb_152175_010--Hb_142368_010 Hb_001247_130--Hb_032208_040 Hb_001728_050 Hb_001728_050 Hb_001247_130--Hb_001728_050 Hb_004357_020 Hb_004357_020 Hb_001247_130--Hb_004357_020 Hb_001946_040 Hb_001946_040 Hb_001247_130--Hb_001946_040 Hb_001247_130--Hb_000130_240 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005541_010 Hb_005541_010 Hb_002411_030--Hb_005541_010 Hb_002411_030--Hb_001728_050 Hb_002411_030--Hb_000130_240 Hb_005675_040 Hb_005675_040 Hb_002411_030--Hb_005675_040 Hb_020367_050 Hb_020367_050 Hb_032208_040--Hb_020367_050 Hb_004055_150 Hb_004055_150 Hb_032208_040--Hb_004055_150 Hb_005965_030 Hb_005965_030 Hb_032208_040--Hb_005965_030 Hb_006960_050 Hb_006960_050 Hb_032208_040--Hb_006960_050 Hb_001926_030 Hb_001926_030 Hb_032208_040--Hb_001926_030 Hb_004586_140 Hb_004586_140 Hb_000061_470--Hb_004586_140 Hb_000407_040 Hb_000407_040 Hb_000061_470--Hb_000407_040 Hb_000179_070 Hb_000179_070 Hb_000061_470--Hb_000179_070 Hb_000878_070 Hb_000878_070 Hb_000061_470--Hb_000878_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_111198_010 Hb_111198_010 Hb_000130_240--Hb_111198_010 Hb_000307_190 Hb_000307_190 Hb_000130_240--Hb_000307_190 Hb_000130_240--Hb_032208_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.53285 6.87148 5.75407 2.54982 5.75832 4.03043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37176 5.67849 4.15358 3.63216 2.35658

CAGE analysis