Hb_005142_010

Information

Type -
Description -
Location Contig5142: 40839-44093
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005142_010 0.0 - - -
2 Hb_005841_030 0.0043141445 - - -
3 Hb_000572_050 0.0125875341 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
4 Hb_001403_030 0.0470314715 - - -
5 Hb_000971_060 0.0518767016 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000201_020 0.0539532726 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
7 Hb_001545_250 0.0543542899 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
8 Hb_010760_010 0.0632975816 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_008839_030 0.0674590321 - - conserved hypothetical protein [Ricinus communis]
10 Hb_070247_010 0.0690308328 - - hypothetical protein [Pseudomonas tolaasii]
11 Hb_020818_010 0.0706196451 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
12 Hb_000450_140 0.0730323623 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
13 Hb_012286_070 0.07313082 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
14 Hb_060455_010 0.0754082089 - - 50 kDa protein [Hevea brasiliensis]
15 Hb_007177_010 0.1209342865 - - -
16 Hb_005020_010 0.123525831 - - -
17 Hb_000638_040 0.1362014651 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
18 Hb_061637_010 0.1462808875 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
19 Hb_004785_010 0.1487235064 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_000174_190 0.1527363162 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_005142_010 Hb_005142_010 Hb_005841_030 Hb_005841_030 Hb_005142_010--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_005142_010--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_005142_010--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_005142_010--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_005142_010--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_005142_010--Hb_001545_250 Hb_005841_030--Hb_000572_050 Hb_005841_030--Hb_001403_030 Hb_005841_030--Hb_000971_060 Hb_005841_030--Hb_000201_020 Hb_005841_030--Hb_001545_250 Hb_000572_050--Hb_001403_030 Hb_000572_050--Hb_000971_060 Hb_000572_050--Hb_000201_020 Hb_000572_050--Hb_001545_250 Hb_001403_030--Hb_000971_060 Hb_001403_030--Hb_000201_020 Hb_001403_030--Hb_001545_250 Hb_010760_010 Hb_010760_010 Hb_001403_030--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_001403_030--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_001403_030--Hb_020818_010 Hb_000971_060--Hb_000201_020 Hb_000971_060--Hb_001545_250 Hb_000971_060--Hb_010760_010 Hb_000971_060--Hb_070247_010 Hb_000971_060--Hb_020818_010 Hb_000201_020--Hb_001545_250 Hb_000201_020--Hb_010760_010 Hb_000201_020--Hb_070247_010 Hb_000201_020--Hb_020818_010 Hb_001545_250--Hb_010760_010 Hb_001545_250--Hb_070247_010 Hb_001545_250--Hb_020818_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.05476 0.13325 0

CAGE analysis