Hb_005143_030

Information

Type -
Description -
Location Contig5143: 55500-64039
Sequence    

Annotation

kegg
ID rcu:RCOM_1163710
description hypothetical protein
nr
ID XP_012078110.1
description PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SD79
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1163710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46418: 55326-56170 , PASA_asmbl_46419: 57886-59735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005143_030 0.0 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
2 Hb_001575_010 0.0631172821 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_028487_010 0.0644020571 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
4 Hb_002107_070 0.0697646035 - - hypothetical protein RCOM_1598630 [Ricinus communis]
5 Hb_000369_130 0.0718508934 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
6 Hb_001821_090 0.0733845383 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
7 Hb_003498_120 0.0768908277 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
8 Hb_000307_210 0.0787397066 - - Transportin 1 isoform 1 [Theobroma cacao]
9 Hb_000069_410 0.0814595306 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
10 Hb_011173_030 0.0822240979 - - pumilio, putative [Ricinus communis]
11 Hb_000622_250 0.0822901951 - - atpob1, putative [Ricinus communis]
12 Hb_001621_130 0.0847589274 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
13 Hb_000740_100 0.0886904664 - - calpain, putative [Ricinus communis]
14 Hb_002329_040 0.0887260535 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_004218_030 0.0890696859 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001913_060 0.091234588 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
17 Hb_007426_130 0.0913462542 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
18 Hb_000505_020 0.0920590757 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
19 Hb_005731_090 0.0929257822 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
20 Hb_007635_030 0.0930774849 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_005143_030 Hb_005143_030 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_028487_010 Hb_028487_010 Hb_005143_030--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120 Hb_000069_410 Hb_000069_410 Hb_001575_010--Hb_000069_410 Hb_001575_010--Hb_001821_090 Hb_001575_010--Hb_028487_010 Hb_002170_050 Hb_002170_050 Hb_001575_010--Hb_002170_050 Hb_011173_030 Hb_011173_030 Hb_001575_010--Hb_011173_030 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_028487_010--Hb_011173_030 Hb_028487_010--Hb_001821_090 Hb_028487_010--Hb_002107_070 Hb_000740_100 Hb_000740_100 Hb_028487_010--Hb_000740_100 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_002107_070--Hb_000369_130 Hb_002107_070--Hb_001821_090 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_003058_060 Hb_003058_060 Hb_000369_130--Hb_003058_060 Hb_006355_090 Hb_006355_090 Hb_000369_130--Hb_006355_090 Hb_000369_130--Hb_001821_090 Hb_001621_130 Hb_001621_130 Hb_000369_130--Hb_001621_130 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_001377_160 Hb_001377_160 Hb_003498_120--Hb_001377_160 Hb_000505_020 Hb_000505_020 Hb_003498_120--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_003498_120--Hb_001235_140 Hb_003498_120--Hb_001821_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13827 1.54682 0.37207 0.914295 1.46507 1.43718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.626038 0.492421 0.521168 1.59469 0.79691

CAGE analysis