Hb_005143_040

Information

Type -
Description -
Location Contig5143: 77354-80333
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15360g
description hypothetical protein
nr
ID KDP45708.1
description hypothetical protein JCGZ_17315 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LET6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46420: 78082-78469 , PASA_asmbl_46421: 78574-79225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005143_040 0.0 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
2 Hb_000023_280 0.1064797317 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
3 Hb_001215_040 0.1095554404 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005914_080 0.1144374884 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
5 Hb_002391_270 0.1178516607 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
6 Hb_005054_290 0.1188232489 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
7 Hb_076693_030 0.1204193898 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
8 Hb_001842_100 0.1246219898 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
9 Hb_000406_080 0.1248081039 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
10 Hb_007875_030 0.1260523394 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
11 Hb_060715_010 0.1271125996 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
12 Hb_003940_040 0.1286064125 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001221_100 0.1295288258 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
14 Hb_000116_410 0.1295752358 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
15 Hb_001584_080 0.1301071778 - - hypothetical protein JCGZ_23206 [Jatropha curcas]
16 Hb_000610_050 0.1311100583 - - skp1, putative [Ricinus communis]
17 Hb_000000_460 0.1327542073 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
18 Hb_181385_010 0.1328395479 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
19 Hb_008695_050 0.1340238854 - - conserved hypothetical protein [Ricinus communis]
20 Hb_074715_010 0.1341702796 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005143_040 Hb_005143_040 Hb_000023_280 Hb_000023_280 Hb_005143_040--Hb_000023_280 Hb_001215_040 Hb_001215_040 Hb_005143_040--Hb_001215_040 Hb_005914_080 Hb_005914_080 Hb_005143_040--Hb_005914_080 Hb_002391_270 Hb_002391_270 Hb_005143_040--Hb_002391_270 Hb_005054_290 Hb_005054_290 Hb_005143_040--Hb_005054_290 Hb_076693_030 Hb_076693_030 Hb_005143_040--Hb_076693_030 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_000023_280--Hb_001215_040 Hb_000116_410 Hb_000116_410 Hb_000023_280--Hb_000116_410 Hb_000312_080 Hb_000312_080 Hb_001215_040--Hb_000312_080 Hb_000175_540 Hb_000175_540 Hb_001215_040--Hb_000175_540 Hb_011344_120 Hb_011344_120 Hb_001215_040--Hb_011344_120 Hb_001653_020 Hb_001653_020 Hb_001215_040--Hb_001653_020 Hb_005365_030 Hb_005365_030 Hb_001215_040--Hb_005365_030 Hb_144528_010 Hb_144528_010 Hb_005914_080--Hb_144528_010 Hb_000009_240 Hb_000009_240 Hb_005914_080--Hb_000009_240 Hb_005731_120 Hb_005731_120 Hb_005914_080--Hb_005731_120 Hb_005914_080--Hb_000023_280 Hb_005188_080 Hb_005188_080 Hb_005914_080--Hb_005188_080 Hb_003940_040 Hb_003940_040 Hb_005914_080--Hb_003940_040 Hb_002391_270--Hb_000009_240 Hb_002391_270--Hb_000116_410 Hb_002391_270--Hb_000645_090 Hb_028285_010 Hb_028285_010 Hb_002391_270--Hb_028285_010 Hb_002391_270--Hb_000023_280 Hb_002391_270--Hb_010142_030 Hb_000000_460 Hb_000000_460 Hb_005054_290--Hb_000000_460 Hb_000329_630 Hb_000329_630 Hb_005054_290--Hb_000329_630 Hb_001439_100 Hb_001439_100 Hb_005054_290--Hb_001439_100 Hb_001102_140 Hb_001102_140 Hb_005054_290--Hb_001102_140 Hb_000003_480 Hb_000003_480 Hb_005054_290--Hb_000003_480 Hb_005054_290--Hb_000023_280 Hb_001047_240 Hb_001047_240 Hb_076693_030--Hb_001047_240 Hb_002596_040 Hb_002596_040 Hb_076693_030--Hb_002596_040 Hb_001824_010 Hb_001824_010 Hb_076693_030--Hb_001824_010 Hb_008695_040 Hb_008695_040 Hb_076693_030--Hb_008695_040 Hb_007875_030 Hb_007875_030 Hb_076693_030--Hb_007875_030 Hb_007735_030 Hb_007735_030 Hb_076693_030--Hb_007735_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27221 1.50486 0.511537 2.32989 1.13482 1.9991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73756 2.39292 0.896707 1.98655 0.388204

CAGE analysis