Hb_005144_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig5144: 12592-14428
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01270g
description POPTRDRAFT_558303; hypothetical protein
nr
ID XP_002314299.1
description hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
swissprot
ID Q9SJL7
description Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1
trembl
ID B9HQM8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s01270g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor rax2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46424: 13487-14295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_020 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
2 Hb_001514_080 0.1470807191 - - hypothetical protein JCGZ_16082 [Jatropha curcas]
3 Hb_004204_160 0.1567203142 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
4 Hb_159769_010 0.1638210102 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
5 Hb_000739_130 0.1681898277 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000281_200 0.1766765001 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
7 Hb_039655_010 0.1822803617 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
8 Hb_000563_610 0.1842039018 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
9 Hb_002046_100 0.1865366417 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
10 Hb_000107_610 0.1873839447 - - protein binding protein, putative [Ricinus communis]
11 Hb_007527_020 0.1893134038 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
12 Hb_004445_090 0.1901697996 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000010_120 0.1916087775 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
14 Hb_000025_510 0.1925028704 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
15 Hb_022250_050 0.1944950828 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005356_010 0.1968011767 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
17 Hb_000141_210 0.1971119218 - - PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
18 Hb_005085_010 0.1983499087 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_001288_010 0.1987415691 - - -
20 Hb_000245_140 0.2008729918 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]

Gene co-expression network

sample Hb_005144_020 Hb_005144_020 Hb_001514_080 Hb_001514_080 Hb_005144_020--Hb_001514_080 Hb_004204_160 Hb_004204_160 Hb_005144_020--Hb_004204_160 Hb_159769_010 Hb_159769_010 Hb_005144_020--Hb_159769_010 Hb_000739_130 Hb_000739_130 Hb_005144_020--Hb_000739_130 Hb_000281_200 Hb_000281_200 Hb_005144_020--Hb_000281_200 Hb_039655_010 Hb_039655_010 Hb_005144_020--Hb_039655_010 Hb_000317_210 Hb_000317_210 Hb_001514_080--Hb_000317_210 Hb_000025_510 Hb_000025_510 Hb_001514_080--Hb_000025_510 Hb_001617_030 Hb_001617_030 Hb_001514_080--Hb_001617_030 Hb_176979_010 Hb_176979_010 Hb_001514_080--Hb_176979_010 Hb_001514_080--Hb_004204_160 Hb_004204_160--Hb_039655_010 Hb_001134_040 Hb_001134_040 Hb_004204_160--Hb_001134_040 Hb_004097_080 Hb_004097_080 Hb_004204_160--Hb_004097_080 Hb_000712_070 Hb_000712_070 Hb_004204_160--Hb_000712_070 Hb_058620_010 Hb_058620_010 Hb_004204_160--Hb_058620_010 Hb_003090_070 Hb_003090_070 Hb_004204_160--Hb_003090_070 Hb_159769_010--Hb_039655_010 Hb_159769_010--Hb_000281_200 Hb_000135_050 Hb_000135_050 Hb_159769_010--Hb_000135_050 Hb_022250_050 Hb_022250_050 Hb_159769_010--Hb_022250_050 Hb_005356_010 Hb_005356_010 Hb_159769_010--Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_159769_010--Hb_007527_020 Hb_000563_610 Hb_000563_610 Hb_000739_130--Hb_000563_610 Hb_007532_050 Hb_007532_050 Hb_000739_130--Hb_007532_050 Hb_000739_130--Hb_007527_020 Hb_010407_120 Hb_010407_120 Hb_000739_130--Hb_010407_120 Hb_004445_090 Hb_004445_090 Hb_000739_130--Hb_004445_090 Hb_000739_130--Hb_159769_010 Hb_001288_010 Hb_001288_010 Hb_000281_200--Hb_001288_010 Hb_000281_200--Hb_005356_010 Hb_000281_200--Hb_007527_020 Hb_003968_020 Hb_003968_020 Hb_000281_200--Hb_003968_020 Hb_178389_020 Hb_178389_020 Hb_000281_200--Hb_178389_020 Hb_000281_200--Hb_039655_010 Hb_039655_010--Hb_005356_010 Hb_039655_010--Hb_178389_020 Hb_004564_010 Hb_004564_010 Hb_039655_010--Hb_004564_010 Hb_039655_010--Hb_001134_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.031244 0.334486 0.152644 0.166203 0.314463 0.0434172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.071264 0 0.104836 5.95125 0.0583429

CAGE analysis