Hb_005144_030

Information

Type -
Description -
Location Contig5144: 31573-35059
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01240g
description POPTRDRAFT_204508; hypothetical protein
nr
ID XP_012064719.1
description PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
swissprot
ID Q8GW72
description Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2
trembl
ID A0A067LIC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05451 PE=4 SV=1
Gene Ontology
ID GO:0005773
description alpha-l-fucosidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46425: 31829-32240 , PASA_asmbl_46426: 32300-32522 , PASA_asmbl_46430: 33606-33932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_030 0.0 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
2 Hb_000330_160 0.1117127742 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
3 Hb_002815_060 0.1301935291 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
4 Hb_005260_040 0.1347584234 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
5 Hb_006501_020 0.1358328088 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
6 Hb_002742_070 0.1361071441 - - PREDICTED: villin-4-like [Jatropha curcas]
7 Hb_001369_350 0.1430715065 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
8 Hb_001031_040 0.1486929041 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003157_030 0.1488006638 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
10 Hb_003029_130 0.1535324293 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
11 Hb_003388_100 0.1542969871 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
12 Hb_000062_060 0.1554433016 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
13 Hb_002742_080 0.1556270594 - - unknown [Populus trichocarpa]
14 Hb_001977_010 0.1558722114 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
15 Hb_001731_020 0.1561177339 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
16 Hb_000487_220 0.1565032497 - - eukaryotic translation elongation factor, putative [Ricinus communis]
17 Hb_054885_020 0.1567277031 - - -
18 Hb_031069_020 0.1586656495 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
19 Hb_003814_030 0.1594838095 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
20 Hb_015099_010 0.1604092419 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]

Gene co-expression network

sample Hb_005144_030 Hb_005144_030 Hb_000330_160 Hb_000330_160 Hb_005144_030--Hb_000330_160 Hb_002815_060 Hb_002815_060 Hb_005144_030--Hb_002815_060 Hb_005260_040 Hb_005260_040 Hb_005144_030--Hb_005260_040 Hb_006501_020 Hb_006501_020 Hb_005144_030--Hb_006501_020 Hb_002742_070 Hb_002742_070 Hb_005144_030--Hb_002742_070 Hb_001369_350 Hb_001369_350 Hb_005144_030--Hb_001369_350 Hb_000330_160--Hb_002742_070 Hb_011953_030 Hb_011953_030 Hb_000330_160--Hb_011953_030 Hb_003814_030 Hb_003814_030 Hb_000330_160--Hb_003814_030 Hb_001031_040 Hb_001031_040 Hb_000330_160--Hb_001031_040 Hb_000136_190 Hb_000136_190 Hb_000330_160--Hb_000136_190 Hb_002815_060--Hb_002742_070 Hb_011206_010 Hb_011206_010 Hb_002815_060--Hb_011206_010 Hb_001731_020 Hb_001731_020 Hb_002815_060--Hb_001731_020 Hb_031069_020 Hb_031069_020 Hb_002815_060--Hb_031069_020 Hb_002903_080 Hb_002903_080 Hb_002815_060--Hb_002903_080 Hb_001040_120 Hb_001040_120 Hb_002815_060--Hb_001040_120 Hb_005725_170 Hb_005725_170 Hb_005260_040--Hb_005725_170 Hb_000158_130 Hb_000158_130 Hb_005260_040--Hb_000158_130 Hb_011671_230 Hb_011671_230 Hb_005260_040--Hb_011671_230 Hb_003529_130 Hb_003529_130 Hb_005260_040--Hb_003529_130 Hb_003388_100 Hb_003388_100 Hb_005260_040--Hb_003388_100 Hb_000120_620 Hb_000120_620 Hb_005260_040--Hb_000120_620 Hb_000640_200 Hb_000640_200 Hb_006501_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_006501_020--Hb_006588_050 Hb_003157_010 Hb_003157_010 Hb_006501_020--Hb_003157_010 Hb_006501_020--Hb_031069_020 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_004899_070 Hb_004899_070 Hb_006501_020--Hb_004899_070 Hb_178041_010 Hb_178041_010 Hb_002742_070--Hb_178041_010 Hb_003157_030 Hb_003157_030 Hb_002742_070--Hb_003157_030 Hb_010128_120 Hb_010128_120 Hb_002742_070--Hb_010128_120 Hb_002742_070--Hb_011953_030 Hb_001178_150 Hb_001178_150 Hb_001369_350--Hb_001178_150 Hb_000935_090 Hb_000935_090 Hb_001369_350--Hb_000935_090 Hb_010925_020 Hb_010925_020 Hb_001369_350--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_001369_350--Hb_002307_350 Hb_001369_350--Hb_000120_620 Hb_000025_650 Hb_000025_650 Hb_001369_350--Hb_000025_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.95721 5.20396 1.77374 2.95305 4.54326 9.48383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.910634 0.585218 0.251128 3.99431 2.08786

CAGE analysis