Hb_005144_050

Information

Type -
Description -
Location Contig5144: 41512-42705
Sequence    

Annotation

kegg
ID vvi:100263678
description S-adenosylmethionine synthase 1
nr
ID XP_010651779.1
description PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
swissprot
ID Q6SYB9
description S-adenosylmethionine synthase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1
trembl
ID A0A0D2SZ25
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G162700 PE=4 SV=1
Gene Ontology
ID GO:0005829
description s-adenosylmethionine synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46435: 40893-41868 , PASA_asmbl_46436: 41921-42982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_050 0.0 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
2 Hb_001366_180 0.0484297985 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
3 Hb_025098_010 0.066581605 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_185255_010 0.0689314146 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_002289_080 0.072373206 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
6 Hb_000289_110 0.0759828573 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
7 Hb_024128_020 0.0779310466 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
8 Hb_001006_020 0.0783564416 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
9 Hb_006478_020 0.0785662231 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_000479_250 0.0836651463 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
11 Hb_001307_030 0.0849042021 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
12 Hb_006274_030 0.0861142581 - - F-box and wd40 domain protein, putative [Ricinus communis]
13 Hb_004935_060 0.0885504067 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_015934_120 0.0903063328 - - PREDICTED: callose synthase 7 [Vitis vinifera]
15 Hb_000116_260 0.0909316677 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
16 Hb_001369_750 0.0918289809 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
17 Hb_009328_020 0.0920579384 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004191_020 0.0939083142 - - PREDICTED: cysteine synthase [Jatropha curcas]
19 Hb_003025_100 0.0949356624 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
20 Hb_006469_080 0.0949948037 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005144_050 Hb_005144_050 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_001366_180--Hb_000289_110 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_001366_180--Hb_002014_030 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_006683_070 Hb_006683_070 Hb_185255_010--Hb_006683_070 Hb_001269_190 Hb_001269_190 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_185255_010--Hb_001307_030 Hb_001168_020 Hb_001168_020 Hb_002289_080--Hb_001168_020 Hb_002289_080--Hb_000310_090 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_002289_080--Hb_006478_020 Hb_001006_020 Hb_001006_020 Hb_000289_110--Hb_001006_020 Hb_002811_130 Hb_002811_130 Hb_000289_110--Hb_002811_130 Hb_000289_110--Hb_002014_030 Hb_000337_050 Hb_000337_050 Hb_000289_110--Hb_000337_050 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_024128_020--Hb_001366_180 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45476 1.60772 2.1364 5.53336 2.69464 3.76541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36716 5.00843 4.47819 2.94545 6.24395

CAGE analysis