Hb_005144_070

Information

Type -
Description -
Location Contig5144: 47491-48144
Sequence    

Annotation

kegg
ID rcu:RCOM_0473910
description hypothetical protein
nr
ID XP_002523706.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCI7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0473910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46440: 47335-47826 , PASA_asmbl_46441: 48037-48333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000809_060 0.1232671126 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
3 Hb_007313_080 0.1357851049 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
4 Hb_000768_130 0.1451445552 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
5 Hb_002081_030 0.1508491655 - - unnamed protein product [Coffea canephora]
6 Hb_000454_180 0.1530179652 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
7 Hb_000742_280 0.1542389825 - - ATP binding protein, putative [Ricinus communis]
8 Hb_003057_020 0.1584624055 - - 40S ribosomal protein S23, putative [Ricinus communis]
9 Hb_000948_220 0.1609524849 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
10 Hb_007885_010 0.1614298032 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
11 Hb_027472_160 0.1656421962 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
12 Hb_000340_500 0.1662701225 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
13 Hb_076693_040 0.1713472008 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
14 Hb_002042_100 0.1727419572 - - PREDICTED: uncharacterized protein LOC105647565 [Jatropha curcas]
15 Hb_002811_090 0.1739898448 - - 40S ribosomal protein S24A [Hevea brasiliensis]
16 Hb_007441_300 0.1743929206 - - ATP binding protein, putative [Ricinus communis]
17 Hb_009778_040 0.175283272 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
18 Hb_000317_070 0.1775072673 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
19 Hb_002686_180 0.1777617706 - - PREDICTED: early nodulin-93-like [Populus euphratica]
20 Hb_000087_130 0.1781143499 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005144_070 Hb_005144_070 Hb_000809_060 Hb_000809_060 Hb_005144_070--Hb_000809_060 Hb_007313_080 Hb_007313_080 Hb_005144_070--Hb_007313_080 Hb_000768_130 Hb_000768_130 Hb_005144_070--Hb_000768_130 Hb_002081_030 Hb_002081_030 Hb_005144_070--Hb_002081_030 Hb_000454_180 Hb_000454_180 Hb_005144_070--Hb_000454_180 Hb_000742_280 Hb_000742_280 Hb_005144_070--Hb_000742_280 Hb_000809_060--Hb_002081_030 Hb_009778_040 Hb_009778_040 Hb_000809_060--Hb_009778_040 Hb_007885_010 Hb_007885_010 Hb_000809_060--Hb_007885_010 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_076693_040 Hb_076693_040 Hb_000809_060--Hb_076693_040 Hb_007313_080--Hb_000768_130 Hb_003020_330 Hb_003020_330 Hb_007313_080--Hb_003020_330 Hb_007313_080--Hb_000454_180 Hb_002900_130 Hb_002900_130 Hb_007313_080--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_007313_080--Hb_154141_030 Hb_027472_160 Hb_027472_160 Hb_007313_080--Hb_027472_160 Hb_000768_130--Hb_154141_030 Hb_000739_140 Hb_000739_140 Hb_000768_130--Hb_000739_140 Hb_000215_330 Hb_000215_330 Hb_000768_130--Hb_000215_330 Hb_000768_130--Hb_003020_330 Hb_005306_070 Hb_005306_070 Hb_000768_130--Hb_005306_070 Hb_000087_130 Hb_000087_130 Hb_002081_030--Hb_000087_130 Hb_001726_040 Hb_001726_040 Hb_002081_030--Hb_001726_040 Hb_000948_220 Hb_000948_220 Hb_002081_030--Hb_000948_220 Hb_002081_030--Hb_027472_160 Hb_002081_030--Hb_009778_040 Hb_000599_280 Hb_000599_280 Hb_000454_180--Hb_000599_280 Hb_003057_020 Hb_003057_020 Hb_000454_180--Hb_003057_020 Hb_006588_080 Hb_006588_080 Hb_000454_180--Hb_006588_080 Hb_011377_020 Hb_011377_020 Hb_000454_180--Hb_011377_020 Hb_007120_090 Hb_007120_090 Hb_000454_180--Hb_007120_090 Hb_024074_010 Hb_024074_010 Hb_000742_280--Hb_024074_010 Hb_131181_010 Hb_131181_010 Hb_000742_280--Hb_131181_010 Hb_001114_080 Hb_001114_080 Hb_000742_280--Hb_001114_080 Hb_000317_070 Hb_000317_070 Hb_000742_280--Hb_000317_070 Hb_010560_030 Hb_010560_030 Hb_000742_280--Hb_010560_030 Hb_000069_700 Hb_000069_700 Hb_000742_280--Hb_000069_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.991005 0.19709 2.26558 1.86778 0.201941 0.360909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.76407 6.28288 0.81776 0.982732 0.675624

CAGE analysis