Hb_005144_080

Information

Type -
Description -
Location Contig5144: 48504-51232
Sequence    

Annotation

kegg
ID rcu:RCOM_0473920
description Serine carboxypeptidase, putative (EC:3.4.16.5)
nr
ID XP_002523707.1
description Serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q56WF8
description Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2
trembl
ID B9SCI8
description Serine carboxypeptidase, putative OS=Ricinus communis GN=RCOM_0473920 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46442: 48561-50084 , PASA_asmbl_46443: 50922-51232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_080 0.0 - - Serine carboxypeptidase, putative [Ricinus communis]
2 Hb_002025_380 0.1011225096 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
3 Hb_006277_030 0.1075458303 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004282_010 0.10869503 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
5 Hb_005731_070 0.1107862238 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005839_030 0.1109231187 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
7 Hb_011129_020 0.111111296 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
8 Hb_001776_070 0.1157300084 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
9 Hb_001040_200 0.1167832877 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
10 Hb_000696_030 0.1179189347 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
11 Hb_027556_060 0.1199619364 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
12 Hb_003189_010 0.1207821566 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
13 Hb_002818_170 0.1210742128 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
14 Hb_000479_230 0.1230360804 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
15 Hb_000956_070 0.1240572857 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
16 Hb_004984_020 0.127428584 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
17 Hb_006501_100 0.1288073774 - - malic enzyme, putative [Ricinus communis]
18 Hb_001157_190 0.129240528 - - PREDICTED: protein YLS3 [Jatropha curcas]
19 Hb_000014_080 0.1321036632 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
20 Hb_000749_160 0.1330401299 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005144_080 Hb_005144_080 Hb_002025_380 Hb_002025_380 Hb_005144_080--Hb_002025_380 Hb_006277_030 Hb_006277_030 Hb_005144_080--Hb_006277_030 Hb_004282_010 Hb_004282_010 Hb_005144_080--Hb_004282_010 Hb_005731_070 Hb_005731_070 Hb_005144_080--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_005144_080--Hb_005839_030 Hb_011129_020 Hb_011129_020 Hb_005144_080--Hb_011129_020 Hb_002025_380--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002025_380--Hb_003189_010 Hb_002818_170 Hb_002818_170 Hb_002025_380--Hb_002818_170 Hb_002097_180 Hb_002097_180 Hb_002025_380--Hb_002097_180 Hb_006501_100 Hb_006501_100 Hb_002025_380--Hb_006501_100 Hb_006277_030--Hb_002818_170 Hb_006277_030--Hb_003189_010 Hb_006277_030--Hb_006501_100 Hb_006277_030--Hb_004282_010 Hb_000956_070 Hb_000956_070 Hb_004282_010--Hb_000956_070 Hb_004282_010--Hb_006501_100 Hb_000014_080 Hb_000014_080 Hb_004282_010--Hb_000014_080 Hb_008727_040 Hb_008727_040 Hb_004282_010--Hb_008727_040 Hb_001568_010 Hb_001568_010 Hb_004282_010--Hb_001568_010 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_007386_030 Hb_007386_030 Hb_005731_070--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_000714_060 Hb_000714_060 Hb_005731_070--Hb_000714_060 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160 Hb_002592_050 Hb_002592_050 Hb_005839_030--Hb_002592_050 Hb_000696_030 Hb_000696_030 Hb_005839_030--Hb_000696_030 Hb_001157_190 Hb_001157_190 Hb_005839_030--Hb_001157_190 Hb_005839_030--Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_005839_030--Hb_004079_100 Hb_011129_020--Hb_004079_100 Hb_023956_010 Hb_023956_010 Hb_011129_020--Hb_023956_010 Hb_003847_050 Hb_003847_050 Hb_011129_020--Hb_003847_050 Hb_000479_230 Hb_000479_230 Hb_011129_020--Hb_000479_230 Hb_007625_030 Hb_007625_030 Hb_011129_020--Hb_007625_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0525761 1.85517 5.27531 9.23316 0.0697148 0.0550408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0266827 0.0209934 0.0396346 8.61616 1.72197

CAGE analysis