Hb_005144_110

Information

Type -
Description -
Location Contig5144: 82488-83133
Sequence    

Annotation

kegg
ID egr:104455487
description uncharacterized LOC104455487
nr
ID XP_010068574.1
description PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID M5XH60
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015515mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_110 0.0 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
2 Hb_000059_010 0.1648385489 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_000140_360 0.1756870303 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
4 Hb_002774_110 0.1841956585 - - heat shock protein binding protein, putative [Ricinus communis]
5 Hb_000815_290 0.1954635791 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
6 Hb_001171_050 0.2000350274 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
7 Hb_005054_270 0.2015055709 - - -
8 Hb_130719_010 0.2027502354 - - V-type proton ATPase subunit E [Hevea brasiliensis]
9 Hb_002078_440 0.213987834 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
10 Hb_005054_260 0.2164777773 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
11 Hb_117807_010 0.2167412891 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
12 Hb_001102_210 0.2191671837 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
13 Hb_003783_030 0.2197195743 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
14 Hb_000614_170 0.2204777721 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
15 Hb_011671_460 0.2217011457 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
16 Hb_008760_010 0.2230827546 - - berberine bridge enzyme [Hevea brasiliensis]
17 Hb_002783_110 0.2286169205 - - Zeamatin precursor, putative [Ricinus communis]
18 Hb_000130_110 0.2290080127 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
19 Hb_007747_180 0.2315715834 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
20 Hb_005496_090 0.2343968631 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005144_110 Hb_005144_110 Hb_000059_010 Hb_000059_010 Hb_005144_110--Hb_000059_010 Hb_000140_360 Hb_000140_360 Hb_005144_110--Hb_000140_360 Hb_002774_110 Hb_002774_110 Hb_005144_110--Hb_002774_110 Hb_000815_290 Hb_000815_290 Hb_005144_110--Hb_000815_290 Hb_001171_050 Hb_001171_050 Hb_005144_110--Hb_001171_050 Hb_005054_270 Hb_005054_270 Hb_005144_110--Hb_005054_270 Hb_000059_010--Hb_000815_290 Hb_001102_210 Hb_001102_210 Hb_000059_010--Hb_001102_210 Hb_130719_010 Hb_130719_010 Hb_000059_010--Hb_130719_010 Hb_002078_440 Hb_002078_440 Hb_000059_010--Hb_002078_440 Hb_001377_420 Hb_001377_420 Hb_000059_010--Hb_001377_420 Hb_000771_060 Hb_000771_060 Hb_000059_010--Hb_000771_060 Hb_000140_360--Hb_001102_210 Hb_000140_360--Hb_002078_440 Hb_000997_190 Hb_000997_190 Hb_000140_360--Hb_000997_190 Hb_002026_120 Hb_002026_120 Hb_000140_360--Hb_002026_120 Hb_117807_010 Hb_117807_010 Hb_000140_360--Hb_117807_010 Hb_000140_360--Hb_000815_290 Hb_002783_110 Hb_002783_110 Hb_002774_110--Hb_002783_110 Hb_002774_110--Hb_000059_010 Hb_001604_150 Hb_001604_150 Hb_002774_110--Hb_001604_150 Hb_000614_170 Hb_000614_170 Hb_002774_110--Hb_000614_170 Hb_002774_110--Hb_001102_210 Hb_000815_290--Hb_000771_060 Hb_005054_260 Hb_005054_260 Hb_000815_290--Hb_005054_260 Hb_005496_090 Hb_005496_090 Hb_000815_290--Hb_005496_090 Hb_004089_020 Hb_004089_020 Hb_000815_290--Hb_004089_020 Hb_000815_290--Hb_130719_010 Hb_000673_020 Hb_000673_020 Hb_001171_050--Hb_000673_020 Hb_000934_190 Hb_000934_190 Hb_001171_050--Hb_000934_190 Hb_015183_060 Hb_015183_060 Hb_001171_050--Hb_015183_060 Hb_005656_100 Hb_005656_100 Hb_001171_050--Hb_005656_100 Hb_002016_080 Hb_002016_080 Hb_001171_050--Hb_002016_080 Hb_013405_140 Hb_013405_140 Hb_001171_050--Hb_013405_140 Hb_006342_020 Hb_006342_020 Hb_005054_270--Hb_006342_020 Hb_001123_100 Hb_001123_100 Hb_005054_270--Hb_001123_100 Hb_000302_290 Hb_000302_290 Hb_005054_270--Hb_000302_290 Hb_001780_140 Hb_001780_140 Hb_005054_270--Hb_001780_140 Hb_006738_030 Hb_006738_030 Hb_005054_270--Hb_006738_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.504659 0.932014 0.891468 0.451295 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10525 2.74904 3.28265 2.15361 1.03108

CAGE analysis