Hb_005144_160

Information

Type -
Description -
Location Contig5144: 109945-116881
Sequence    

Annotation

kegg
ID rcu:RCOM_0474390
description hypothetical protein
nr
ID XP_012064705.1
description PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9Q1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46451: 111660-112119 , PASA_asmbl_46452: 112651-115565 , PASA_asmbl_46453: 115652-116834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_160 0.0 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
2 Hb_000580_180 0.0432699258 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007691_030 0.0514743134 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
4 Hb_002200_080 0.0546166827 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
5 Hb_003177_030 0.0585787974 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
6 Hb_002863_050 0.0590953526 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_006634_070 0.0607166549 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
8 Hb_000010_330 0.0623075317 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
9 Hb_000120_670 0.0628545174 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
10 Hb_006455_120 0.0632929659 - - n6-DNA-methyltransferase, putative [Ricinus communis]
11 Hb_022115_020 0.0665855682 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
12 Hb_011037_030 0.067391317 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
13 Hb_019280_040 0.0699855329 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_011995_010 0.0714116832 - - dc50, putative [Ricinus communis]
15 Hb_005357_080 0.0718136145 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
16 Hb_001009_270 0.0721454347 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
17 Hb_021409_040 0.0726567656 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
18 Hb_000003_250 0.0729318307 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_000603_150 0.0732758288 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
20 Hb_001159_130 0.0734401057 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005144_160 Hb_005144_160 Hb_000580_180 Hb_000580_180 Hb_005144_160--Hb_000580_180 Hb_007691_030 Hb_007691_030 Hb_005144_160--Hb_007691_030 Hb_002200_080 Hb_002200_080 Hb_005144_160--Hb_002200_080 Hb_003177_030 Hb_003177_030 Hb_005144_160--Hb_003177_030 Hb_002863_050 Hb_002863_050 Hb_005144_160--Hb_002863_050 Hb_006634_070 Hb_006634_070 Hb_005144_160--Hb_006634_070 Hb_011344_210 Hb_011344_210 Hb_000580_180--Hb_011344_210 Hb_001142_030 Hb_001142_030 Hb_000580_180--Hb_001142_030 Hb_000120_670 Hb_000120_670 Hb_000580_180--Hb_000120_670 Hb_000580_180--Hb_002863_050 Hb_000580_180--Hb_007691_030 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000010_330 Hb_000010_330 Hb_002200_080--Hb_000010_330 Hb_019280_040 Hb_019280_040 Hb_002200_080--Hb_019280_040 Hb_002200_080--Hb_007691_030 Hb_003195_070 Hb_003195_070 Hb_002200_080--Hb_003195_070 Hb_000085_160 Hb_000085_160 Hb_002200_080--Hb_000085_160 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_005496_140 Hb_005496_140 Hb_002863_050--Hb_005496_140 Hb_002863_050--Hb_001142_030 Hb_003416_010 Hb_003416_010 Hb_002863_050--Hb_003416_010 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_006455_120 Hb_006455_120 Hb_006634_070--Hb_006455_120 Hb_023344_120 Hb_023344_120 Hb_006634_070--Hb_023344_120 Hb_011037_030 Hb_011037_030 Hb_006634_070--Hb_011037_030 Hb_001409_020 Hb_001409_020 Hb_006634_070--Hb_001409_020 Hb_000156_010 Hb_000156_010 Hb_006634_070--Hb_000156_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48624 5.96764 5.53453 9.64049 9.51555 9.26701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.02444 9.80651 10.2911 6.38086 6.17532

CAGE analysis