Hb_005144_190

Information

Type -
Description -
Location Contig5144: 135697-140718
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01140g
description POPTRDRAFT_1088868; hypothetical protein
nr
ID KHG01767.1
description hypothetical protein F383_09558 [Gossypium arboreum]
swissprot
ID Q42572
description DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2
trembl
ID A0A0B0MN31
description DNA ligase OS=Gossypium arboreum GN=F383_09558 PE=3 SV=1
Gene Ontology
ID GO:0006259
description dna ligase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_190 0.0 - - hypothetical protein F383_09558 [Gossypium arboreum]
2 Hb_001470_070 0.211635821 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_000886_030 0.2219686833 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
4 Hb_003687_220 0.2360624951 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
5 Hb_000599_310 0.2526476061 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
6 Hb_002631_300 0.2557063651 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
7 Hb_001623_070 0.2583922076 - - cytochrome B5 isoform 1, putative [Ricinus communis]
8 Hb_000694_060 0.265420219 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
9 Hb_001449_100 0.2654848458 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
10 Hb_000049_240 0.2700188846 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
11 Hb_034904_010 0.2701941021 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
12 Hb_007145_010 0.2710588012 - - ammonium transporter 3.1-like protein [Camellia sinensis]
13 Hb_002675_200 0.272194672 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
14 Hb_091889_010 0.2760723358 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
15 Hb_006503_010 0.2769534357 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_002227_010 0.2800984168 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
17 Hb_004787_040 0.2811458322 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001322_030 0.2817018463 - - triacylglycerol lipase, putative [Ricinus communis]
19 Hb_004679_060 0.2825143187 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003687_030 0.2826314321 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_005144_190 Hb_005144_190 Hb_001470_070 Hb_001470_070 Hb_005144_190--Hb_001470_070 Hb_000886_030 Hb_000886_030 Hb_005144_190--Hb_000886_030 Hb_003687_220 Hb_003687_220 Hb_005144_190--Hb_003687_220 Hb_000599_310 Hb_000599_310 Hb_005144_190--Hb_000599_310 Hb_002631_300 Hb_002631_300 Hb_005144_190--Hb_002631_300 Hb_001623_070 Hb_001623_070 Hb_005144_190--Hb_001623_070 Hb_002675_200 Hb_002675_200 Hb_001470_070--Hb_002675_200 Hb_007145_010 Hb_007145_010 Hb_001470_070--Hb_007145_010 Hb_006503_010 Hb_006503_010 Hb_001470_070--Hb_006503_010 Hb_001322_030 Hb_001322_030 Hb_001470_070--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001470_070--Hb_034904_010 Hb_003687_030 Hb_003687_030 Hb_000886_030--Hb_003687_030 Hb_001675_030 Hb_001675_030 Hb_000886_030--Hb_001675_030 Hb_000529_280 Hb_000529_280 Hb_000886_030--Hb_000529_280 Hb_172632_050 Hb_172632_050 Hb_000886_030--Hb_172632_050 Hb_004787_040 Hb_004787_040 Hb_000886_030--Hb_004787_040 Hb_000465_510 Hb_000465_510 Hb_000886_030--Hb_000465_510 Hb_170426_010 Hb_170426_010 Hb_003687_220--Hb_170426_010 Hb_008759_020 Hb_008759_020 Hb_003687_220--Hb_008759_020 Hb_002338_030 Hb_002338_030 Hb_003687_220--Hb_002338_030 Hb_001449_100 Hb_001449_100 Hb_003687_220--Hb_001449_100 Hb_004679_060 Hb_004679_060 Hb_003687_220--Hb_004679_060 Hb_000599_310--Hb_002338_030 Hb_002835_340 Hb_002835_340 Hb_000599_310--Hb_002835_340 Hb_000599_310--Hb_000886_030 Hb_007849_010 Hb_007849_010 Hb_000599_310--Hb_007849_010 Hb_000049_200 Hb_000049_200 Hb_000599_310--Hb_000049_200 Hb_002960_090 Hb_002960_090 Hb_000599_310--Hb_002960_090 Hb_003178_020 Hb_003178_020 Hb_002631_300--Hb_003178_020 Hb_001767_060 Hb_001767_060 Hb_002631_300--Hb_001767_060 Hb_000189_540 Hb_000189_540 Hb_002631_300--Hb_000189_540 Hb_101146_010 Hb_101146_010 Hb_002631_300--Hb_101146_010 Hb_003673_040 Hb_003673_040 Hb_002631_300--Hb_003673_040 Hb_000152_210 Hb_000152_210 Hb_002631_300--Hb_000152_210 Hb_002890_070 Hb_002890_070 Hb_001623_070--Hb_002890_070 Hb_003376_380 Hb_003376_380 Hb_001623_070--Hb_003376_380 Hb_003398_020 Hb_003398_020 Hb_001623_070--Hb_003398_020 Hb_001439_090 Hb_001439_090 Hb_001623_070--Hb_001439_090 Hb_011609_110 Hb_011609_110 Hb_001623_070--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_001623_070--Hb_042871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0611235 0.808192 0.671747 0.666163 0 0.0440789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.233062 2.19976 0 0.397461 0.150703

CAGE analysis