Hb_005147_040

Information

Type -
Description -
Location Contig5147: 29361-36456
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011162mg
description hypothetical protein
nr
ID XP_012066686.1
description PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00252 PE=4 SV=1
Gene Ontology
ID GO:0016772
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_040 0.0 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
2 Hb_020805_170 0.1445113004 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
3 Hb_000010_350 0.1556128678 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
4 Hb_000062_080 0.1595848454 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
5 Hb_001863_150 0.1620172509 - - VQ motif-containing family protein [Populus trichocarpa]
6 Hb_000107_440 0.1661947196 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
7 Hb_000645_240 0.1665931754 - - AMP dependent ligase, putative [Ricinus communis]
8 Hb_000997_110 0.1673073529 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
9 Hb_007007_070 0.1692367173 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
10 Hb_001288_070 0.1706133676 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
11 Hb_004976_040 0.1708952068 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
12 Hb_000022_180 0.1711573803 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
13 Hb_000802_190 0.1713616105 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
14 Hb_003299_010 0.1715515833 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_002477_120 0.1716809997 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
16 Hb_000866_090 0.1717173659 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
17 Hb_117895_010 0.1726116382 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
18 Hb_000866_370 0.1751878271 - - synaptotagmin, putative [Ricinus communis]
19 Hb_005400_040 0.1756540405 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
20 Hb_004108_170 0.1770714663 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005147_040 Hb_005147_040 Hb_020805_170 Hb_020805_170 Hb_005147_040--Hb_020805_170 Hb_000010_350 Hb_000010_350 Hb_005147_040--Hb_000010_350 Hb_000062_080 Hb_000062_080 Hb_005147_040--Hb_000062_080 Hb_001863_150 Hb_001863_150 Hb_005147_040--Hb_001863_150 Hb_000107_440 Hb_000107_440 Hb_005147_040--Hb_000107_440 Hb_000645_240 Hb_000645_240 Hb_005147_040--Hb_000645_240 Hb_008066_070 Hb_008066_070 Hb_020805_170--Hb_008066_070 Hb_000140_410 Hb_000140_410 Hb_020805_170--Hb_000140_410 Hb_001114_070 Hb_001114_070 Hb_020805_170--Hb_001114_070 Hb_000022_180 Hb_000022_180 Hb_020805_170--Hb_000022_180 Hb_000905_170 Hb_000905_170 Hb_020805_170--Hb_000905_170 Hb_000010_350--Hb_000062_080 Hb_001865_060 Hb_001865_060 Hb_000010_350--Hb_001865_060 Hb_000866_370 Hb_000866_370 Hb_000010_350--Hb_000866_370 Hb_004108_170 Hb_004108_170 Hb_000010_350--Hb_004108_170 Hb_000448_060 Hb_000448_060 Hb_000010_350--Hb_000448_060 Hb_089100_040 Hb_089100_040 Hb_000010_350--Hb_089100_040 Hb_000062_080--Hb_001865_060 Hb_127599_010 Hb_127599_010 Hb_000062_080--Hb_127599_010 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_001141_360 Hb_001141_360 Hb_000062_080--Hb_001141_360 Hb_002235_240 Hb_002235_240 Hb_001863_150--Hb_002235_240 Hb_001863_150--Hb_001141_360 Hb_005400_040 Hb_005400_040 Hb_001863_150--Hb_005400_040 Hb_004724_130 Hb_004724_130 Hb_001863_150--Hb_004724_130 Hb_042175_010 Hb_042175_010 Hb_001863_150--Hb_042175_010 Hb_009838_060 Hb_009838_060 Hb_001863_150--Hb_009838_060 Hb_000038_040 Hb_000038_040 Hb_000107_440--Hb_000038_040 Hb_000803_060 Hb_000803_060 Hb_000107_440--Hb_000803_060 Hb_006846_020 Hb_006846_020 Hb_000107_440--Hb_006846_020 Hb_011716_050 Hb_011716_050 Hb_000107_440--Hb_011716_050 Hb_002477_120 Hb_002477_120 Hb_000107_440--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_000107_440--Hb_007007_080 Hb_000866_090 Hb_000866_090 Hb_000645_240--Hb_000866_090 Hb_000645_240--Hb_000022_180 Hb_004976_040 Hb_004976_040 Hb_000645_240--Hb_004976_040 Hb_000645_240--Hb_000866_370 Hb_000081_120 Hb_000081_120 Hb_000645_240--Hb_000081_120 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.344297 3.13093 0.410792 0.495021 0.134449 0.431348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.170076 0.267646 0.254129 1.39022 0.177033

CAGE analysis