Hb_005147_060

Information

Type -
Description -
Location Contig5147: 42496-51087
Sequence    

Annotation

kegg
ID cmo:103491156
description shaggy-related protein kinase kappa
nr
ID XP_011028359.1
description PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
swissprot
ID Q39019
description Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=2
trembl
ID A0A067L1Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00254 PE=4 SV=1
Gene Ontology
ID GO:0004674
description shaggy-related protein kinase kappa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46472: 43740-50986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_060 0.0 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
2 Hb_004732_020 0.0755885031 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
3 Hb_008103_040 0.0828609275 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
4 Hb_005211_100 0.087646349 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
5 Hb_004659_020 0.0981400792 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
6 Hb_058643_010 0.1047892264 - - hydrolase, putative [Ricinus communis]
7 Hb_001691_120 0.1065739164 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
8 Hb_009529_030 0.1082232621 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
9 Hb_001541_090 0.1083710625 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_001488_410 0.1085784893 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_002811_060 0.1115478747 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
12 Hb_002783_240 0.1120299715 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
13 Hb_001143_110 0.1176768797 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
14 Hb_148079_010 0.1178069565 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
15 Hb_001675_070 0.117807327 - - eukaryotic translation elongation factor, putative [Ricinus communis]
16 Hb_000260_170 0.1196908242 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
17 Hb_103760_010 0.1219264466 - - serine/arginine rich splicing factor, putative [Ricinus communis]
18 Hb_007026_040 0.1219960639 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
19 Hb_004102_140 0.1220043224 - - conserved hypothetical protein [Ricinus communis]
20 Hb_028639_010 0.1229641455 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_005147_060 Hb_005147_060 Hb_004732_020 Hb_004732_020 Hb_005147_060--Hb_004732_020 Hb_008103_040 Hb_008103_040 Hb_005147_060--Hb_008103_040 Hb_005211_100 Hb_005211_100 Hb_005147_060--Hb_005211_100 Hb_004659_020 Hb_004659_020 Hb_005147_060--Hb_004659_020 Hb_058643_010 Hb_058643_010 Hb_005147_060--Hb_058643_010 Hb_001691_120 Hb_001691_120 Hb_005147_060--Hb_001691_120 Hb_004732_020--Hb_005211_100 Hb_003777_310 Hb_003777_310 Hb_004732_020--Hb_003777_310 Hb_023001_060 Hb_023001_060 Hb_004732_020--Hb_023001_060 Hb_004732_020--Hb_001691_120 Hb_007192_080 Hb_007192_080 Hb_004732_020--Hb_007192_080 Hb_001541_090 Hb_001541_090 Hb_008103_040--Hb_001541_090 Hb_009529_030 Hb_009529_030 Hb_008103_040--Hb_009529_030 Hb_001341_120 Hb_001341_120 Hb_008103_040--Hb_001341_120 Hb_007426_150 Hb_007426_150 Hb_008103_040--Hb_007426_150 Hb_000212_320 Hb_000212_320 Hb_008103_040--Hb_000212_320 Hb_002783_240 Hb_002783_240 Hb_005211_100--Hb_002783_240 Hb_103012_010 Hb_103012_010 Hb_005211_100--Hb_103012_010 Hb_000116_500 Hb_000116_500 Hb_005211_100--Hb_000116_500 Hb_001488_410 Hb_001488_410 Hb_005211_100--Hb_001488_410 Hb_000608_320 Hb_000608_320 Hb_005211_100--Hb_000608_320 Hb_004102_140 Hb_004102_140 Hb_005211_100--Hb_004102_140 Hb_000004_030 Hb_000004_030 Hb_004659_020--Hb_000004_030 Hb_004659_020--Hb_009529_030 Hb_017295_010 Hb_017295_010 Hb_004659_020--Hb_017295_010 Hb_002785_050 Hb_002785_050 Hb_004659_020--Hb_002785_050 Hb_002248_110 Hb_002248_110 Hb_004659_020--Hb_002248_110 Hb_002273_120 Hb_002273_120 Hb_004659_020--Hb_002273_120 Hb_058643_010--Hb_005211_100 Hb_003988_010 Hb_003988_010 Hb_058643_010--Hb_003988_010 Hb_001675_070 Hb_001675_070 Hb_058643_010--Hb_001675_070 Hb_011310_160 Hb_011310_160 Hb_058643_010--Hb_011310_160 Hb_001357_270 Hb_001357_270 Hb_058643_010--Hb_001357_270 Hb_005054_100 Hb_005054_100 Hb_001691_120--Hb_005054_100 Hb_005679_050 Hb_005679_050 Hb_001691_120--Hb_005679_050 Hb_000169_090 Hb_000169_090 Hb_001691_120--Hb_000169_090 Hb_002811_060 Hb_002811_060 Hb_001691_120--Hb_002811_060 Hb_009535_020 Hb_009535_020 Hb_001691_120--Hb_009535_020 Hb_028639_010 Hb_028639_010 Hb_001691_120--Hb_028639_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5916 11.4876 18.5543 44.4088 51.4461 61.4576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4834 14.3479 31.9742 40.413 19.5812

CAGE analysis