Hb_005147_110

Information

Type -
Description -
Location Contig5147: 121662-124976
Sequence    

Annotation

kegg
ID vvi:100264325
description elongation factor 1-gamma-like
nr
ID ADR70876.1
description eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
swissprot
ID Q9FUM1
description Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1
trembl
ID V5IV11
description Eukaryotic translation elongation factor 1B gamma-subunit OS=Hevea brasiliensis GN=EF1Bgamma PE=2 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46487: 121693-125216
cDNA
(Sanger)
(ID:Location)		 048_B02.ab1: 123365-125216 , 048_G24.ab1: 122032-123475

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_110 0.0 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
2 Hb_008725_250 0.0518635888 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_004310_060 0.0547489563 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_001341_030 0.0646475155 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
5 Hb_005914_230 0.0663157322 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
6 Hb_018663_020 0.0669507708 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
7 Hb_000373_270 0.0689484796 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
8 Hb_001975_070 0.0758153991 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
9 Hb_001969_040 0.0786036867 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
10 Hb_002169_010 0.0805490922 - - PREDICTED: la-related protein 6B [Jatropha curcas]
11 Hb_005314_010 0.0838230996 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_002249_140 0.0843368955 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
13 Hb_001141_080 0.0851516585 - - PREDICTED: protein RDM1 [Jatropha curcas]
14 Hb_005333_020 0.0860891323 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
15 Hb_002960_060 0.0863823086 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
16 Hb_000462_150 0.0872282901 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
17 Hb_001226_180 0.087540798 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
18 Hb_011930_010 0.0903360182 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
19 Hb_000300_280 0.090497542 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
20 Hb_042083_070 0.0916273 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_005147_110 Hb_005147_110 Hb_008725_250 Hb_008725_250 Hb_005147_110--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005147_110--Hb_004310_060 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270 Hb_008725_250--Hb_004310_060 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_005914_230 Hb_004310_060--Hb_018663_020 Hb_001341_030--Hb_000373_270 Hb_001341_030--Hb_004310_060 Hb_001341_030--Hb_018663_020 Hb_001975_070 Hb_001975_070 Hb_001341_030--Hb_001975_070 Hb_001969_040 Hb_001969_040 Hb_001341_030--Hb_001969_040 Hb_003384_030 Hb_003384_030 Hb_005914_230--Hb_003384_030 Hb_005914_230--Hb_018663_020 Hb_000001_180 Hb_000001_180 Hb_005914_230--Hb_000001_180 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_000373_270--Hb_000300_280 Hb_000373_270--Hb_004310_060 Hb_000186_280 Hb_000186_280 Hb_000373_270--Hb_000186_280 Hb_000373_270--Hb_000879_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1446.2 527.986 185.776 166.033 1013.05 1074.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
847.19 432.836 563.208 325.166 90.5993

CAGE analysis