Hb_005152_010

Information

Type -
Description -
Location Contig5152: 21063-22463
Sequence    

Annotation

kegg
ID pop:POPTR_0015s15850g
description POPTRDRAFT_666830; hypothetical protein
nr
ID KDP44629.1
description hypothetical protein JCGZ_22048 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LK01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22048 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46488: 21095-22967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005152_010 0.0 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
2 Hb_007545_140 0.1692881747 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
3 Hb_000922_010 0.1711158904 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
4 Hb_002597_010 0.1847761489 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
5 Hb_064122_010 0.1999418802 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
6 Hb_030982_060 0.2020867916 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002471_260 0.2029854754 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
8 Hb_000589_210 0.2030406949 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
9 Hb_002835_350 0.2063585084 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
10 Hb_006788_010 0.2067110342 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
11 Hb_000005_230 0.2105999114 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
12 Hb_000471_080 0.2107002685 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
13 Hb_000380_210 0.2107642498 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
14 Hb_001369_140 0.2167063829 - - conserved hypothetical protein [Ricinus communis]
15 Hb_158092_060 0.2197553962 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
16 Hb_008066_060 0.2208020028 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
17 Hb_000186_290 0.2231824175 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
18 Hb_006141_030 0.2253506546 - - -
19 Hb_032225_030 0.2275366244 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
20 Hb_031336_020 0.2278593082 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005152_010 Hb_005152_010 Hb_007545_140 Hb_007545_140 Hb_005152_010--Hb_007545_140 Hb_000922_010 Hb_000922_010 Hb_005152_010--Hb_000922_010 Hb_002597_010 Hb_002597_010 Hb_005152_010--Hb_002597_010 Hb_064122_010 Hb_064122_010 Hb_005152_010--Hb_064122_010 Hb_030982_060 Hb_030982_060 Hb_005152_010--Hb_030982_060 Hb_002471_260 Hb_002471_260 Hb_005152_010--Hb_002471_260 Hb_032225_030 Hb_032225_030 Hb_007545_140--Hb_032225_030 Hb_007545_140--Hb_002597_010 Hb_000589_210 Hb_000589_210 Hb_007545_140--Hb_000589_210 Hb_001369_140 Hb_001369_140 Hb_007545_140--Hb_001369_140 Hb_000380_210 Hb_000380_210 Hb_007545_140--Hb_000380_210 Hb_001004_100 Hb_001004_100 Hb_000922_010--Hb_001004_100 Hb_158092_060 Hb_158092_060 Hb_000922_010--Hb_158092_060 Hb_000471_080 Hb_000471_080 Hb_000922_010--Hb_000471_080 Hb_001123_010 Hb_001123_010 Hb_000922_010--Hb_001123_010 Hb_000922_010--Hb_030982_060 Hb_000032_560 Hb_000032_560 Hb_002597_010--Hb_000032_560 Hb_000005_230 Hb_000005_230 Hb_002597_010--Hb_000005_230 Hb_002016_020 Hb_002016_020 Hb_002597_010--Hb_002016_020 Hb_080147_060 Hb_080147_060 Hb_002597_010--Hb_080147_060 Hb_000347_230 Hb_000347_230 Hb_002597_010--Hb_000347_230 Hb_018133_110 Hb_018133_110 Hb_002597_010--Hb_018133_110 Hb_064122_010--Hb_001369_140 Hb_009711_040 Hb_009711_040 Hb_064122_010--Hb_009711_040 Hb_000676_380 Hb_000676_380 Hb_064122_010--Hb_000676_380 Hb_003090_230 Hb_003090_230 Hb_064122_010--Hb_003090_230 Hb_009732_040 Hb_009732_040 Hb_064122_010--Hb_009732_040 Hb_142382_010 Hb_142382_010 Hb_064122_010--Hb_142382_010 Hb_011947_020 Hb_011947_020 Hb_030982_060--Hb_011947_020 Hb_030982_060--Hb_032225_030 Hb_001439_110 Hb_001439_110 Hb_030982_060--Hb_001439_110 Hb_003592_030 Hb_003592_030 Hb_030982_060--Hb_003592_030 Hb_000189_590 Hb_000189_590 Hb_030982_060--Hb_000189_590 Hb_028872_150 Hb_028872_150 Hb_002471_260--Hb_028872_150 Hb_029921_030 Hb_029921_030 Hb_002471_260--Hb_029921_030 Hb_003972_060 Hb_003972_060 Hb_002471_260--Hb_003972_060 Hb_002539_010 Hb_002539_010 Hb_002471_260--Hb_002539_010 Hb_011633_040 Hb_011633_040 Hb_002471_260--Hb_011633_040 Hb_021409_140 Hb_021409_140 Hb_002471_260--Hb_021409_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165824 1.47791 4.89613 20.945 0 0.4729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92894 3.08605 1.98023 44.1021 2.44693

CAGE analysis