Hb_005154_090

Information

Type -
Description -
Location Contig5154: 78479-89397
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46493: 81227-81526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005154_090 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_003375_050 0.1562127801 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_041813_060 0.1611248558 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
4 Hb_062192_060 0.1631404072 - - maturase (mitochondrion) [Hevea brasiliensis]
5 Hb_041813_050 0.1645334292 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
6 Hb_062192_030 0.1657649683 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
7 Hb_041813_040 0.1674659776 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
8 Hb_088080_030 0.1738042863 - - ribosomal protein S4 [Hevea brasiliensis]
9 Hb_127552_050 0.1797151828 - - hypothetical protein VITISV_030752 [Vitis vinifera]
10 Hb_000574_330 0.183428907 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
11 Hb_102602_020 0.1839936745 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
12 Hb_006040_160 0.1871197871 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
13 Hb_072212_020 0.1934296829 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
14 Hb_168031_020 0.1947520694 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
15 Hb_011649_030 0.1967155872 - - hypothetical protein [Vitis hybrid cultivar]
16 Hb_189099_020 0.1974577975 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
17 Hb_005092_070 0.1982671299 - - Oligopeptide transporter, putative [Ricinus communis]
18 Hb_032016_010 0.1988466507 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
19 Hb_102602_010 0.1991587619 - - orf175 (mitochondrion) [Panax ginseng]
20 Hb_002482_050 0.1991857678 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005154_090 Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_005154_090--Hb_003375_050 Hb_041813_060 Hb_041813_060 Hb_005154_090--Hb_041813_060 Hb_062192_060 Hb_062192_060 Hb_005154_090--Hb_062192_060 Hb_041813_050 Hb_041813_050 Hb_005154_090--Hb_041813_050 Hb_062192_030 Hb_062192_030 Hb_005154_090--Hb_062192_030 Hb_041813_040 Hb_041813_040 Hb_005154_090--Hb_041813_040 Hb_034197_020 Hb_034197_020 Hb_003375_050--Hb_034197_020 Hb_003375_050--Hb_041813_050 Hb_002482_050 Hb_002482_050 Hb_003375_050--Hb_002482_050 Hb_003375_050--Hb_062192_060 Hb_151401_010 Hb_151401_010 Hb_003375_050--Hb_151401_010 Hb_000029_380 Hb_000029_380 Hb_041813_060--Hb_000029_380 Hb_000574_330 Hb_000574_330 Hb_041813_060--Hb_000574_330 Hb_003125_100 Hb_003125_100 Hb_041813_060--Hb_003125_100 Hb_041813_060--Hb_041813_040 Hb_001295_080 Hb_001295_080 Hb_041813_060--Hb_001295_080 Hb_062192_060--Hb_002482_050 Hb_062192_060--Hb_041813_050 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_189099_020 Hb_189099_020 Hb_062192_030--Hb_189099_020 Hb_041813_030 Hb_041813_030 Hb_062192_030--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_062192_030--Hb_042463_070 Hb_001338_080 Hb_001338_080 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070 Hb_041813_040--Hb_000574_330 Hb_011649_030 Hb_011649_030 Hb_041813_040--Hb_011649_030 Hb_102602_020 Hb_102602_020 Hb_041813_040--Hb_102602_020 Hb_000352_060 Hb_000352_060 Hb_041813_040--Hb_000352_060 Hb_127552_050 Hb_127552_050 Hb_041813_040--Hb_127552_050 Hb_067472_010 Hb_067472_010 Hb_041813_040--Hb_067472_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00542731 0.0382747 0.0136648 0.0677102 0.00439538 0.0119709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00994859 0 0.0301029 0.068199 0.621437

CAGE analysis