Hb_005155_010

Information

Type -
Description -
Location Contig5155: 3378-22214
Sequence    

Annotation

kegg
ID rcu:RCOM_0688710
description amino acid transporter, putative
nr
ID XP_002520822.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q6DEL1
description Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1
trembl
ID B9S4A3
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0688710 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sodium-coupled neutral amino acid transporter 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46495: 7861-10314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005155_010 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_061908_020 0.1297949073 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_002609_130 0.1339094826 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
4 Hb_004605_020 0.1339559053 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
5 Hb_042463_060 0.1353000491 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000321_120 0.1405516573 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
7 Hb_010261_030 0.1422512886 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_002006_060 0.1487875609 - - PREDICTED: oleosin 1-like [Jatropha curcas]
9 Hb_155150_010 0.1520696765 - - kinase, putative [Ricinus communis]
10 Hb_062229_010 0.1624903026 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_036568_010 0.1663577482 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
12 Hb_006618_020 0.1701095497 - - Vacuolar-processing enzyme precursor [Ricinus communis]
13 Hb_000847_010 0.1704664473 - - PREDICTED: uncharacterized protein LOC102608064 [Citrus sinensis]
14 Hb_003517_090 0.175777022 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
15 Hb_002395_020 0.1781827649 - - Protein CREG1 precursor, putative [Ricinus communis]
16 Hb_029748_020 0.1784817939 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_027337_030 0.1790164101 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
18 Hb_005271_180 0.1797735317 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
19 Hb_000363_050 0.180112008 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
20 Hb_000757_020 0.1802612823 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005155_010 Hb_005155_010 Hb_061908_020 Hb_061908_020 Hb_005155_010--Hb_061908_020 Hb_002609_130 Hb_002609_130 Hb_005155_010--Hb_002609_130 Hb_004605_020 Hb_004605_020 Hb_005155_010--Hb_004605_020 Hb_042463_060 Hb_042463_060 Hb_005155_010--Hb_042463_060 Hb_000321_120 Hb_000321_120 Hb_005155_010--Hb_000321_120 Hb_010261_030 Hb_010261_030 Hb_005155_010--Hb_010261_030 Hb_061908_020--Hb_004605_020 Hb_062229_010 Hb_062229_010 Hb_061908_020--Hb_062229_010 Hb_001391_100 Hb_001391_100 Hb_061908_020--Hb_001391_100 Hb_172676_010 Hb_172676_010 Hb_061908_020--Hb_172676_010 Hb_027337_030 Hb_027337_030 Hb_061908_020--Hb_027337_030 Hb_006618_020 Hb_006618_020 Hb_061908_020--Hb_006618_020 Hb_002609_130--Hb_004605_020 Hb_000847_010 Hb_000847_010 Hb_002609_130--Hb_000847_010 Hb_000816_160 Hb_000816_160 Hb_002609_130--Hb_000816_160 Hb_002609_130--Hb_010261_030 Hb_005271_180 Hb_005271_180 Hb_002609_130--Hb_005271_180 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_004605_020--Hb_006618_020 Hb_004605_020--Hb_062229_010 Hb_004505_030 Hb_004505_030 Hb_042463_060--Hb_004505_030 Hb_002110_110 Hb_002110_110 Hb_042463_060--Hb_002110_110 Hb_042463_060--Hb_004605_020 Hb_003517_090 Hb_003517_090 Hb_042463_060--Hb_003517_090 Hb_000032_020 Hb_000032_020 Hb_042463_060--Hb_000032_020 Hb_029748_020 Hb_029748_020 Hb_000321_120--Hb_029748_020 Hb_000340_360 Hb_000340_360 Hb_000321_120--Hb_000340_360 Hb_000221_180 Hb_000221_180 Hb_000321_120--Hb_000221_180 Hb_000175_270 Hb_000175_270 Hb_000321_120--Hb_000175_270 Hb_013399_090 Hb_013399_090 Hb_000321_120--Hb_013399_090 Hb_001269_050 Hb_001269_050 Hb_000321_120--Hb_001269_050 Hb_117840_010 Hb_117840_010 Hb_010261_030--Hb_117840_010 Hb_010261_030--Hb_062229_010 Hb_002218_070 Hb_002218_070 Hb_010261_030--Hb_002218_070 Hb_001971_020 Hb_001971_020 Hb_010261_030--Hb_001971_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0869 34.3212 6.12622 14.8516 2.48543 3.48175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.343702 0.270449 1.57294 8.35159 26.6864

CAGE analysis