Hb_005162_070

Information

Type -
Description -
Location Contig5162: 52184-54424
Sequence    

Annotation

kegg
ID rcu:RCOM_1582560
description hypothetical protein
nr
ID XP_002513657.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIT8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46512: 52221-54780
cDNA
(Sanger)
(ID:Location)		 020_E07.ab1: 52221-53857

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005162_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002027_040 0.0559967703 - - synapse-associated protein, putative [Ricinus communis]
3 Hb_000260_570 0.0654562839 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_008695_100 0.0690339084 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
5 Hb_011030_020 0.0780667562 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
6 Hb_001140_220 0.0813714601 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_013607_040 0.0813974701 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
8 Hb_000617_150 0.0826497269 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
9 Hb_000567_120 0.086119703 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
10 Hb_002235_280 0.087006581 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
11 Hb_019263_020 0.0871184151 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
12 Hb_003053_020 0.0895874509 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
13 Hb_020805_130 0.0896099906 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_001959_190 0.0906335347 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
15 Hb_011534_030 0.0915257775 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
16 Hb_010608_050 0.0919272564 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
17 Hb_172932_010 0.0922389127 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000047_030 0.096759117 - - tfiif-alpha, putative [Ricinus communis]
19 Hb_030565_030 0.097537184 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
20 Hb_004079_030 0.0979434947 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005162_070 Hb_005162_070 Hb_002027_040 Hb_002027_040 Hb_005162_070--Hb_002027_040 Hb_000260_570 Hb_000260_570 Hb_005162_070--Hb_000260_570 Hb_008695_100 Hb_008695_100 Hb_005162_070--Hb_008695_100 Hb_011030_020 Hb_011030_020 Hb_005162_070--Hb_011030_020 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_004079_030 Hb_004079_030 Hb_002027_040--Hb_004079_030 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_002027_040--Hb_000260_570 Hb_001493_180 Hb_001493_180 Hb_000260_570--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_000260_570--Hb_001090_050 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_000723_080 Hb_000723_080 Hb_008695_100--Hb_000723_080 Hb_008695_100--Hb_000567_120 Hb_008695_100--Hb_010608_050 Hb_008695_100--Hb_000617_150 Hb_002235_280 Hb_002235_280 Hb_008695_100--Hb_002235_280 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_011030_020--Hb_008695_100 Hb_011030_020--Hb_000617_150 Hb_001140_220--Hb_000567_120 Hb_011242_040 Hb_011242_040 Hb_001140_220--Hb_011242_040 Hb_001140_220--Hb_002235_280 Hb_000258_270 Hb_000258_270 Hb_001140_220--Hb_000258_270 Hb_001140_220--Hb_008695_100 Hb_001140_220--Hb_000723_080 Hb_019263_020 Hb_019263_020 Hb_013607_040--Hb_019263_020 Hb_002307_170 Hb_002307_170 Hb_013607_040--Hb_002307_170 Hb_001373_180 Hb_001373_180 Hb_013607_040--Hb_001373_180 Hb_013607_040--Hb_002235_280 Hb_004846_070 Hb_004846_070 Hb_013607_040--Hb_004846_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.4191 50.9422 28.7297 57.187 53.2879 61.2733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.8566 131.853 223.067 56.718 89.4302

CAGE analysis