Hb_005162_090

Information

Type -
Description -
Location Contig5162: 55121-59245
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07790g
description POPTRDRAFT_1075865; hypothetical protein
nr
ID XP_012090191.1
description PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID A0A067JRV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26065 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46513: 55113-59222 , PASA_asmbl_46515: 57847-58464 , PASA_asmbl_46516: 56823-57257
cDNA
(Sanger)
(ID:Location)		 001_M01.ab1: 55680-59222

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005162_090 0.0 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
2 Hb_062226_130 0.0553550014 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
3 Hb_000738_020 0.0636561922 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000869_080 0.0671412613 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
5 Hb_139294_010 0.0688127176 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_012022_040 0.0696719405 - - Protein SIS1, putative [Ricinus communis]
7 Hb_000221_190 0.0763965947 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
8 Hb_013358_040 0.0770131645 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
9 Hb_164010_040 0.0770843034 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_000029_060 0.0774542149 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
11 Hb_000347_250 0.0782614356 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
12 Hb_004607_090 0.0799936394 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
13 Hb_000603_160 0.0801971951 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
14 Hb_000069_310 0.0802778178 - - ubiquitin ligase [Cucumis melo subsp. melo]
15 Hb_084247_010 0.0811204846 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000856_010 0.0814184448 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
17 Hb_005563_070 0.0818704201 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
18 Hb_003878_090 0.0826545564 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
19 Hb_001278_100 0.0850507772 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
20 Hb_003607_130 0.0869131748 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005162_090 Hb_005162_090 Hb_062226_130 Hb_062226_130 Hb_005162_090--Hb_062226_130 Hb_000738_020 Hb_000738_020 Hb_005162_090--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_005162_090--Hb_000869_080 Hb_139294_010 Hb_139294_010 Hb_005162_090--Hb_139294_010 Hb_012022_040 Hb_012022_040 Hb_005162_090--Hb_012022_040 Hb_000221_190 Hb_000221_190 Hb_005162_090--Hb_000221_190 Hb_062226_130--Hb_000738_020 Hb_000365_230 Hb_000365_230 Hb_062226_130--Hb_000365_230 Hb_164010_040 Hb_164010_040 Hb_062226_130--Hb_164010_040 Hb_003849_110 Hb_003849_110 Hb_062226_130--Hb_003849_110 Hb_003428_010 Hb_003428_010 Hb_062226_130--Hb_003428_010 Hb_012239_020 Hb_012239_020 Hb_000738_020--Hb_012239_020 Hb_002073_200 Hb_002073_200 Hb_000738_020--Hb_002073_200 Hb_000738_020--Hb_003849_110 Hb_000738_020--Hb_000869_080 Hb_000729_030 Hb_000729_030 Hb_000869_080--Hb_000729_030 Hb_000869_080--Hb_164010_040 Hb_013358_040 Hb_013358_040 Hb_000869_080--Hb_013358_040 Hb_000869_080--Hb_002073_200 Hb_139294_010--Hb_012022_040 Hb_005784_040 Hb_005784_040 Hb_139294_010--Hb_005784_040 Hb_000347_250 Hb_000347_250 Hb_139294_010--Hb_000347_250 Hb_139294_010--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_139294_010--Hb_017987_050 Hb_000856_010 Hb_000856_010 Hb_012022_040--Hb_000856_010 Hb_001278_100 Hb_001278_100 Hb_012022_040--Hb_001278_100 Hb_004109_220 Hb_004109_220 Hb_012022_040--Hb_004109_220 Hb_149985_010 Hb_149985_010 Hb_012022_040--Hb_149985_010 Hb_012022_040--Hb_000221_190 Hb_000928_070 Hb_000928_070 Hb_012022_040--Hb_000928_070 Hb_003582_060 Hb_003582_060 Hb_000221_190--Hb_003582_060 Hb_000310_020 Hb_000310_020 Hb_000221_190--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000221_190--Hb_000505_130 Hb_006615_240 Hb_006615_240 Hb_000221_190--Hb_006615_240 Hb_000221_190--Hb_001278_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.139 42.9791 37.7225 50.0894 20.1407 24.1273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.5198 46.6334 34.1973 21.0516 33.8914

CAGE analysis