Hb_005162_110

Information

Type -
Description -
Location Contig5162: 71734-83787
Sequence    

Annotation

kegg
ID rcu:RCOM_1582790
description hypothetical protein
nr
ID XP_012090198.1
description PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
swissprot
ID O31634
description Uncharacterized membrane protein YjcL OS=Bacillus subtilis (strain 168) GN=yjcL PE=4 SV=1
trembl
ID A0A067JHJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26069 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46518: 71360-71899 , PASA_asmbl_46519: 70518-72632 , PASA_asmbl_46520: 70507-71204 , PASA_asmbl_46521: 74033-81969 , PASA_asmbl_46524: 81981-83650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005162_110 0.0 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
2 Hb_005946_040 0.0654645205 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
3 Hb_021650_010 0.0663594269 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
4 Hb_000003_170 0.0688477827 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
5 Hb_005731_110 0.0741805389 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
6 Hb_000051_060 0.0742046269 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003752_070 0.0759709477 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
8 Hb_002218_020 0.0782853975 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
9 Hb_000663_020 0.0794655909 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004994_080 0.079519902 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001935_100 0.0823410834 - - structural molecule, putative [Ricinus communis]
12 Hb_012438_030 0.0838713456 - - PREDICTED: protein sym-1 [Jatropha curcas]
13 Hb_002874_180 0.0853908077 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
14 Hb_001824_080 0.0870939814 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
15 Hb_001703_040 0.0881149417 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_000012_270 0.0885717093 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
17 Hb_000003_780 0.0887818268 - - hexokinase [Manihot esculenta]
18 Hb_000640_160 0.0897144679 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
19 Hb_002631_240 0.0901647724 - - JHL17M24.3 [Jatropha curcas]
20 Hb_003225_020 0.0902073727 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_005162_110 Hb_005162_110 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_021650_010 Hb_021650_010 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_005731_110 Hb_005731_110 Hb_005162_110--Hb_005731_110 Hb_000051_060 Hb_000051_060 Hb_005162_110--Hb_000051_060 Hb_003752_070 Hb_003752_070 Hb_005162_110--Hb_003752_070 Hb_000537_100 Hb_000537_100 Hb_005946_040--Hb_000537_100 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_002631_240 Hb_002631_240 Hb_005946_040--Hb_002631_240 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090 Hb_021650_010--Hb_003752_070 Hb_001232_150 Hb_001232_150 Hb_021650_010--Hb_001232_150 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270 Hb_002874_180 Hb_002874_180 Hb_000003_170--Hb_002874_180 Hb_001703_040 Hb_001703_040 Hb_000003_170--Hb_001703_040 Hb_000003_170--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_000003_170--Hb_000163_260 Hb_004109_120 Hb_004109_120 Hb_000003_170--Hb_004109_120 Hb_000640_160 Hb_000640_160 Hb_005731_110--Hb_000640_160 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030 Hb_001935_100 Hb_001935_100 Hb_000051_060--Hb_001935_100 Hb_000051_060--Hb_003752_070 Hb_002876_220 Hb_002876_220 Hb_000051_060--Hb_002876_220 Hb_000051_060--Hb_001232_150 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15837 2.10648 7.53458 2.61566 2.67876 2.2687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91072 2.80752 1.78053 1.707 4.88099

CAGE analysis