Hb_005163_010

Information

Type -
Description -
Location Contig5163: 19707-23289
Sequence    

Annotation

kegg
ID rcu:RCOM_1764780
description 1,8-cineole synthase, chloroplast precursor, putative (EC:4.2.3.20)
nr
ID XP_012078988.1
description PREDICTED: probable terpene synthase 11 [Jatropha curcas]
swissprot
ID B9RHP7
description Probable terpene synthase 11 OS=Ricinus communis GN=TPS11 PE=3 SV=1
trembl
ID A0A067K837
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13839 PE=4 SV=1
Gene Ontology
ID GO:0000287
description geraniol synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005163_010 0.0 - - PREDICTED: probable terpene synthase 11 [Jatropha curcas]
2 Hb_000879_100 0.100071545 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_000369_150 0.1096455548 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
4 Hb_119441_010 0.1111722147 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
5 Hb_005643_010 0.1227444037 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
6 Hb_001331_050 0.1334768749 - - hypothetical protein VITISV_022439 [Vitis vinifera]
7 Hb_010368_040 0.1350345196 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004098_010 0.1356934074 - - -
9 Hb_066262_010 0.137234084 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
10 Hb_000656_360 0.1386572316 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
11 Hb_004059_010 0.1393636067 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_003847_140 0.1399975801 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
13 Hb_001190_020 0.145535112 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_004656_030 0.1478755561 - - putative pectin methylesterase family protein [Populus trichocarpa]
15 Hb_176149_010 0.1506363901 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
16 Hb_001510_050 0.1534455943 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000336_160 0.1546343704 - - ATP binding protein, putative [Ricinus communis]
18 Hb_027913_010 0.1547128554 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000128_010 0.1577181905 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_005940_040 0.1582623005 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_005163_010 Hb_005163_010 Hb_000879_100 Hb_000879_100 Hb_005163_010--Hb_000879_100 Hb_000369_150 Hb_000369_150 Hb_005163_010--Hb_000369_150 Hb_119441_010 Hb_119441_010 Hb_005163_010--Hb_119441_010 Hb_005643_010 Hb_005643_010 Hb_005163_010--Hb_005643_010 Hb_001331_050 Hb_001331_050 Hb_005163_010--Hb_001331_050 Hb_010368_040 Hb_010368_040 Hb_005163_010--Hb_010368_040 Hb_000879_100--Hb_005643_010 Hb_000879_100--Hb_119441_010 Hb_000879_100--Hb_000369_150 Hb_000879_100--Hb_001331_050 Hb_066262_010 Hb_066262_010 Hb_000879_100--Hb_066262_010 Hb_003847_140 Hb_003847_140 Hb_000879_100--Hb_003847_140 Hb_000369_150--Hb_119441_010 Hb_004098_010 Hb_004098_010 Hb_000369_150--Hb_004098_010 Hb_000128_010 Hb_000128_010 Hb_000369_150--Hb_000128_010 Hb_176149_010 Hb_176149_010 Hb_000369_150--Hb_176149_010 Hb_000369_150--Hb_005643_010 Hb_119441_010--Hb_005643_010 Hb_119441_010--Hb_001331_050 Hb_119441_010--Hb_004098_010 Hb_119441_010--Hb_000128_010 Hb_005643_010--Hb_001331_050 Hb_005643_010--Hb_066262_010 Hb_000277_020 Hb_000277_020 Hb_005643_010--Hb_000277_020 Hb_001331_050--Hb_000369_150 Hb_045810_010 Hb_045810_010 Hb_001331_050--Hb_045810_010 Hb_006351_080 Hb_006351_080 Hb_001331_050--Hb_006351_080 Hb_001190_020 Hb_001190_020 Hb_010368_040--Hb_001190_020 Hb_004059_010 Hb_004059_010 Hb_010368_040--Hb_004059_010 Hb_006519_010 Hb_006519_010 Hb_010368_040--Hb_006519_010 Hb_039757_010 Hb_039757_010 Hb_010368_040--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_010368_040--Hb_001405_180 Hb_009897_030 Hb_009897_030 Hb_010368_040--Hb_009897_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.82759 0 0.132293 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0382464 0.120914 0

CAGE analysis