Hb_005167_010

Information

Type -
Description -
Location Contig5167: 9486-11580
Sequence    

Annotation

kegg
ID rcu:RCOM_1237680
description Protein kinase APK1B, chloroplast precursor, putative
nr
ID XP_012084274.1
description PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
swissprot
ID Q8GXZ3
description Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1
trembl
ID A0A067JUX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19770 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase at5g01020 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46535: 9408-24864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005167_010 0.0 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
2 Hb_001195_060 0.0513307884 - - Protein yrdA, putative [Ricinus communis]
3 Hb_012799_170 0.0560879429 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
4 Hb_006132_090 0.0604952886 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
5 Hb_000080_130 0.0717779543 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
6 Hb_004545_110 0.0725654887 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
7 Hb_007975_060 0.0772268577 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
8 Hb_000811_070 0.0776127434 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
9 Hb_000566_120 0.0785566813 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
10 Hb_000920_200 0.0791312022 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
11 Hb_003878_090 0.079199771 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
12 Hb_000580_020 0.080306196 - - unnamed protein product [Vitis vinifera]
13 Hb_003728_060 0.081539453 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
14 Hb_005016_040 0.0823084036 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
15 Hb_002157_120 0.0823603333 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000140_090 0.0827387766 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
17 Hb_006573_190 0.0831100341 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
18 Hb_003124_150 0.0834793642 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
19 Hb_003119_060 0.0838058671 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
20 Hb_007904_230 0.0839036119 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005167_010 Hb_005167_010 Hb_001195_060 Hb_001195_060 Hb_005167_010--Hb_001195_060 Hb_012799_170 Hb_012799_170 Hb_005167_010--Hb_012799_170 Hb_006132_090 Hb_006132_090 Hb_005167_010--Hb_006132_090 Hb_000080_130 Hb_000080_130 Hb_005167_010--Hb_000080_130 Hb_004545_110 Hb_004545_110 Hb_005167_010--Hb_004545_110 Hb_007975_060 Hb_007975_060 Hb_005167_010--Hb_007975_060 Hb_000920_200 Hb_000920_200 Hb_001195_060--Hb_000920_200 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_001195_060--Hb_012799_170 Hb_000127_140 Hb_000127_140 Hb_001195_060--Hb_000127_140 Hb_001195_060--Hb_004545_110 Hb_000566_120 Hb_000566_120 Hb_012799_170--Hb_000566_120 Hb_003622_030 Hb_003622_030 Hb_012799_170--Hb_003622_030 Hb_001322_110 Hb_001322_110 Hb_012799_170--Hb_001322_110 Hb_002540_080 Hb_002540_080 Hb_012799_170--Hb_002540_080 Hb_001900_140 Hb_001900_140 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_002157_120 Hb_002157_120 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_003119_060 Hb_003119_060 Hb_006132_090--Hb_003119_060 Hb_000080_130--Hb_004545_110 Hb_015675_040 Hb_015675_040 Hb_000080_130--Hb_015675_040 Hb_001269_130 Hb_001269_130 Hb_000080_130--Hb_001269_130 Hb_133702_010 Hb_133702_010 Hb_000080_130--Hb_133702_010 Hb_000663_060 Hb_000663_060 Hb_000080_130--Hb_000663_060 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_004754_050 Hb_004754_050 Hb_007975_060--Hb_004754_050 Hb_000061_180 Hb_000061_180 Hb_007975_060--Hb_000061_180 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_007975_060--Hb_133702_010 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15966 5.30221 15.9057 14.2922 6.82601 6.38432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6886 15.1733 12.2107 7.69954 13.2627

CAGE analysis