Hb_005168_020

Information

Type -
Description -
Location Contig5168: 40188-41543
Sequence    

Annotation

kegg
ID rcu:RCOM_1586730
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012068187.1
description PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
swissprot
ID Q058P4
description U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1
trembl
ID A0A067KZG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16003 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46538: 39460-40695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005168_020 0.0 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
2 Hb_005663_090 0.1016266339 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
3 Hb_000951_090 0.1207627055 - - Oligopeptide transporter, putative [Ricinus communis]
4 Hb_002072_040 0.1239164639 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
5 Hb_000337_030 0.1357818836 - - amino acid transporter, putative [Ricinus communis]
6 Hb_000714_060 0.1416936555 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
7 Hb_000152_120 0.1433051704 - - alpha-l-fucosidase, putative [Ricinus communis]
8 Hb_000668_050 0.1440283684 - - phosphoglycerate mutase, putative [Ricinus communis]
9 Hb_005731_070 0.1474586456 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002851_070 0.1517249058 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
11 Hb_001832_140 0.1528196671 - - endomembrane protein 70 family protein [Medicago truncatula]
12 Hb_000000_200 0.1543308378 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
13 Hb_000616_010 0.1561373751 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004446_060 0.1566763894 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_007017_100 0.1578467319 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
16 Hb_001104_020 0.1584219178 - - DNA binding protein, putative [Ricinus communis]
17 Hb_001832_110 0.1594308379 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
18 Hb_000635_110 0.1597370779 - - ELMO domain-containing protein, putative [Ricinus communis]
19 Hb_093218_010 0.1604385974 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
20 Hb_002918_120 0.1618713503 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_005168_020 Hb_005168_020 Hb_005663_090 Hb_005663_090 Hb_005168_020--Hb_005663_090 Hb_000951_090 Hb_000951_090 Hb_005168_020--Hb_000951_090 Hb_002072_040 Hb_002072_040 Hb_005168_020--Hb_002072_040 Hb_000337_030 Hb_000337_030 Hb_005168_020--Hb_000337_030 Hb_000714_060 Hb_000714_060 Hb_005168_020--Hb_000714_060 Hb_000152_120 Hb_000152_120 Hb_005168_020--Hb_000152_120 Hb_001439_010 Hb_001439_010 Hb_005663_090--Hb_001439_010 Hb_005663_090--Hb_000337_030 Hb_000680_070 Hb_000680_070 Hb_005663_090--Hb_000680_070 Hb_006469_090 Hb_006469_090 Hb_005663_090--Hb_006469_090 Hb_005731_070 Hb_005731_070 Hb_005663_090--Hb_005731_070 Hb_093218_010 Hb_093218_010 Hb_000951_090--Hb_093218_010 Hb_001104_020 Hb_001104_020 Hb_000951_090--Hb_001104_020 Hb_000951_090--Hb_000152_120 Hb_029639_030 Hb_029639_030 Hb_000951_090--Hb_029639_030 Hb_000951_090--Hb_000714_060 Hb_002805_180 Hb_002805_180 Hb_000951_090--Hb_002805_180 Hb_002025_380 Hb_002025_380 Hb_002072_040--Hb_002025_380 Hb_009767_050 Hb_009767_050 Hb_002072_040--Hb_009767_050 Hb_006277_030 Hb_006277_030 Hb_002072_040--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002072_040--Hb_003189_010 Hb_002072_040--Hb_005731_070 Hb_019278_010 Hb_019278_010 Hb_000337_030--Hb_019278_010 Hb_000337_030--Hb_000152_120 Hb_001244_070 Hb_001244_070 Hb_000337_030--Hb_001244_070 Hb_000181_220 Hb_000181_220 Hb_000337_030--Hb_000181_220 Hb_170023_010 Hb_170023_010 Hb_000337_030--Hb_170023_010 Hb_000714_060--Hb_093218_010 Hb_032260_060 Hb_032260_060 Hb_000714_060--Hb_032260_060 Hb_000714_060--Hb_005731_070 Hb_001473_060 Hb_001473_060 Hb_000714_060--Hb_001473_060 Hb_000714_060--Hb_001104_020 Hb_000152_120--Hb_001244_070 Hb_000152_120--Hb_001104_020 Hb_000732_220 Hb_000732_220 Hb_000152_120--Hb_000732_220 Hb_020805_070 Hb_020805_070 Hb_000152_120--Hb_020805_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.166074 1.88759 1.85979 0 0.0405364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.103357 2.0426 1.20797

CAGE analysis