Hb_005168_030

Information

Type -
Description -
Location Contig5168: 40691-44142
Sequence    

Annotation

kegg
ID -
description -
nr
ID ACN35813.1
description unknown [Zea mays]
swissprot
ID -
description -
trembl
ID A0A0A9NSU4
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46539: 41305-41807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005168_030 0.0 - - unknown [Zea mays]
2 Hb_106321_010 0.0637234907 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
3 Hb_123560_020 0.0709254884 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
4 Hb_011440_010 0.0947745058 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
5 Hb_004586_110 0.1072561702 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_002960_010 0.1138908386 - - Zeamatin precursor, putative [Ricinus communis]
7 Hb_002003_030 0.1146551743 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
8 Hb_000471_010 0.1243212504 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001345_010 0.1324907962 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
10 Hb_005614_030 0.1327421356 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
11 Hb_007676_040 0.1331686169 - - cellulose synthase, putative [Ricinus communis]
12 Hb_009486_120 0.1334935722 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
13 Hb_001358_120 0.1354765159 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
14 Hb_009150_060 0.1380947383 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
15 Hb_000684_490 0.1404287974 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
16 Hb_150730_010 0.1419829548 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_009296_060 0.1425702457 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_002984_040 0.1447264566 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000844_090 0.1449647798 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
20 Hb_001300_140 0.1457410851 - - -

Gene co-expression network

sample Hb_005168_030 Hb_005168_030 Hb_106321_010 Hb_106321_010 Hb_005168_030--Hb_106321_010 Hb_123560_020 Hb_123560_020 Hb_005168_030--Hb_123560_020 Hb_011440_010 Hb_011440_010 Hb_005168_030--Hb_011440_010 Hb_004586_110 Hb_004586_110 Hb_005168_030--Hb_004586_110 Hb_002960_010 Hb_002960_010 Hb_005168_030--Hb_002960_010 Hb_002003_030 Hb_002003_030 Hb_005168_030--Hb_002003_030 Hb_106321_010--Hb_123560_020 Hb_000215_420 Hb_000215_420 Hb_106321_010--Hb_000215_420 Hb_000705_090 Hb_000705_090 Hb_106321_010--Hb_000705_090 Hb_106321_010--Hb_011440_010 Hb_106321_010--Hb_002003_030 Hb_123560_020--Hb_011440_010 Hb_009486_120 Hb_009486_120 Hb_123560_020--Hb_009486_120 Hb_000336_280 Hb_000336_280 Hb_123560_020--Hb_000336_280 Hb_001186_120 Hb_001186_120 Hb_123560_020--Hb_001186_120 Hb_001300_140 Hb_001300_140 Hb_011440_010--Hb_001300_140 Hb_009150_060 Hb_009150_060 Hb_011440_010--Hb_009150_060 Hb_000753_180 Hb_000753_180 Hb_011440_010--Hb_000753_180 Hb_001358_120 Hb_001358_120 Hb_011440_010--Hb_001358_120 Hb_000471_010 Hb_000471_010 Hb_004586_110--Hb_000471_010 Hb_000684_490 Hb_000684_490 Hb_004586_110--Hb_000684_490 Hb_011861_020 Hb_011861_020 Hb_004586_110--Hb_011861_020 Hb_009812_010 Hb_009812_010 Hb_004586_110--Hb_009812_010 Hb_004586_110--Hb_009150_060 Hb_002811_330 Hb_002811_330 Hb_002960_010--Hb_002811_330 Hb_000521_360 Hb_000521_360 Hb_002960_010--Hb_000521_360 Hb_007676_040 Hb_007676_040 Hb_002960_010--Hb_007676_040 Hb_005542_040 Hb_005542_040 Hb_002960_010--Hb_005542_040 Hb_001345_010 Hb_001345_010 Hb_002960_010--Hb_001345_010 Hb_116469_010 Hb_116469_010 Hb_002003_030--Hb_116469_010 Hb_150730_010 Hb_150730_010 Hb_002003_030--Hb_150730_010 Hb_009778_050 Hb_009778_050 Hb_002003_030--Hb_009778_050 Hb_000057_180 Hb_000057_180 Hb_002003_030--Hb_000057_180 Hb_002003_030--Hb_011861_020 Hb_002003_030--Hb_000471_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0995674 0.341566 0.0742567 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.5455 0.131751

CAGE analysis