Hb_005171_020

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig5171: 28445-29464
Sequence    

Annotation

kegg
ID rcu:RCOM_0409800
description zinc finger protein, putative
nr
ID XP_012081705.1
description PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
swissprot
ID Q9LSL6
description Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1
trembl
ID A0A067KD94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18734 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005171_020 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
2 Hb_043327_010 0.0101690375 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
3 Hb_006272_010 0.0193144506 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
4 Hb_001715_050 0.0364622956 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
5 Hb_002997_060 0.0414655232 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
6 Hb_083242_040 0.0469129183 - - -
7 Hb_003228_060 0.0485246333 - - conserved hypothetical protein [Ricinus communis]
8 Hb_183479_030 0.0490772951 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
9 Hb_000696_200 0.0559238409 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
10 Hb_000504_220 0.0592152992 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
11 Hb_001089_120 0.0751532926 - - PREDICTED: pectinesterase [Jatropha curcas]
12 Hb_007594_020 0.0752446515 - - hypothetical protein JCGZ_18350 [Jatropha curcas]
13 Hb_008489_030 0.0755857407 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_003947_020 0.0798417335 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
15 Hb_048694_010 0.0806768158 - - catalytic, putative [Ricinus communis]
16 Hb_003952_030 0.0821299681 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
17 Hb_000893_040 0.0828018509 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
18 Hb_034168_060 0.0845214755 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
19 Hb_003251_010 0.0848797548 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
20 Hb_006331_010 0.0867498539 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]

Gene co-expression network

sample Hb_005171_020 Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_005171_020--Hb_043327_010 Hb_006272_010 Hb_006272_010 Hb_005171_020--Hb_006272_010 Hb_001715_050 Hb_001715_050 Hb_005171_020--Hb_001715_050 Hb_002997_060 Hb_002997_060 Hb_005171_020--Hb_002997_060 Hb_083242_040 Hb_083242_040 Hb_005171_020--Hb_083242_040 Hb_003228_060 Hb_003228_060 Hb_005171_020--Hb_003228_060 Hb_043327_010--Hb_006272_010 Hb_043327_010--Hb_002997_060 Hb_043327_010--Hb_001715_050 Hb_000504_220 Hb_000504_220 Hb_043327_010--Hb_000504_220 Hb_183479_030 Hb_183479_030 Hb_043327_010--Hb_183479_030 Hb_006272_010--Hb_001715_050 Hb_006272_010--Hb_083242_040 Hb_006272_010--Hb_003228_060 Hb_006272_010--Hb_183479_030 Hb_001715_050--Hb_083242_040 Hb_001715_050--Hb_003228_060 Hb_000696_200 Hb_000696_200 Hb_001715_050--Hb_000696_200 Hb_008489_030 Hb_008489_030 Hb_002997_060--Hb_008489_030 Hb_002997_060--Hb_000696_200 Hb_002997_060--Hb_003228_060 Hb_000893_040 Hb_000893_040 Hb_002997_060--Hb_000893_040 Hb_083242_040--Hb_003228_060 Hb_083242_040--Hb_000696_200 Hb_034168_060 Hb_034168_060 Hb_083242_040--Hb_034168_060 Hb_003228_060--Hb_000696_200 Hb_003228_060--Hb_034168_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0494271 0.0709601 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.717015

CAGE analysis