Hb_005171_060

Information

Type -
Description -
Location Contig5171: 79073-80635
Sequence    

Annotation

kegg
ID rcu:RCOM_0366700
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_002534286.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9ZRF1
description Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1
trembl
ID B9T7R7
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0366700 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable mannitol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005171_060 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_007491_010 0.1130521712 - - Spotted leaf protein, putative [Ricinus communis]
3 Hb_003237_040 0.1177439542 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
4 Hb_004503_010 0.1240327213 - - PREDICTED: EG45-like domain containing protein [Prunus mume]
5 Hb_002570_020 0.1377397697 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
6 Hb_001003_020 0.1397559979 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
7 Hb_002173_080 0.1406422903 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_004448_030 0.1428482266 - - PREDICTED: RING-H2 finger protein ATL40-like [Jatropha curcas]
9 Hb_003189_030 0.1429802512 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
10 Hb_000679_070 0.1444459279 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
11 Hb_135392_010 0.1458231735 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
12 Hb_000712_060 0.1503648472 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
13 Hb_012707_050 0.1523410299 - - hypothetical protein RCOM_1341590 [Ricinus communis]
14 Hb_001948_040 0.1587858951 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
15 Hb_002876_310 0.1587987607 - - hypothetical protein JCGZ_03912 [Jatropha curcas]
16 Hb_115414_010 0.160443113 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
17 Hb_007417_020 0.1648716583 - - Reticuline oxidase precursor, putative [Ricinus communis]
18 Hb_009026_040 0.1650658585 - - pathogenesis-related family protein [Populus trichocarpa]
19 Hb_039791_010 0.1653242932 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
20 Hb_035726_020 0.1684038336 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]

Gene co-expression network

sample Hb_005171_060 Hb_005171_060 Hb_007491_010 Hb_007491_010 Hb_005171_060--Hb_007491_010 Hb_003237_040 Hb_003237_040 Hb_005171_060--Hb_003237_040 Hb_004503_010 Hb_004503_010 Hb_005171_060--Hb_004503_010 Hb_002570_020 Hb_002570_020 Hb_005171_060--Hb_002570_020 Hb_001003_020 Hb_001003_020 Hb_005171_060--Hb_001003_020 Hb_002173_080 Hb_002173_080 Hb_005171_060--Hb_002173_080 Hb_135392_010 Hb_135392_010 Hb_007491_010--Hb_135392_010 Hb_007491_010--Hb_003237_040 Hb_007417_020 Hb_007417_020 Hb_007491_010--Hb_007417_020 Hb_001464_010 Hb_001464_010 Hb_007491_010--Hb_001464_010 Hb_004448_030 Hb_004448_030 Hb_007491_010--Hb_004448_030 Hb_004097_080 Hb_004097_080 Hb_007491_010--Hb_004097_080 Hb_000127_250 Hb_000127_250 Hb_003237_040--Hb_000127_250 Hb_058620_040 Hb_058620_040 Hb_003237_040--Hb_058620_040 Hb_003237_040--Hb_135392_010 Hb_003237_040--Hb_007417_020 Hb_058620_050 Hb_058620_050 Hb_003237_040--Hb_058620_050 Hb_039791_010 Hb_039791_010 Hb_004503_010--Hb_039791_010 Hb_004503_010--Hb_002570_020 Hb_000712_060 Hb_000712_060 Hb_004503_010--Hb_000712_060 Hb_002876_310 Hb_002876_310 Hb_004503_010--Hb_002876_310 Hb_023732_020 Hb_023732_020 Hb_004503_010--Hb_023732_020 Hb_001948_040 Hb_001948_040 Hb_002570_020--Hb_001948_040 Hb_002570_020--Hb_002876_310 Hb_009026_040 Hb_009026_040 Hb_002570_020--Hb_009026_040 Hb_000679_070 Hb_000679_070 Hb_002570_020--Hb_000679_070 Hb_002570_020--Hb_000712_060 Hb_000828_020 Hb_000828_020 Hb_002570_020--Hb_000828_020 Hb_035726_020 Hb_035726_020 Hb_001003_020--Hb_035726_020 Hb_003189_030 Hb_003189_030 Hb_001003_020--Hb_003189_030 Hb_000659_010 Hb_000659_010 Hb_001003_020--Hb_000659_010 Hb_022815_020 Hb_022815_020 Hb_001003_020--Hb_022815_020 Hb_004222_010 Hb_004222_010 Hb_001003_020--Hb_004222_010 Hb_033843_020 Hb_033843_020 Hb_001003_020--Hb_033843_020 Hb_039562_010 Hb_039562_010 Hb_002173_080--Hb_039562_010 Hb_002173_080--Hb_003189_030 Hb_000487_150 Hb_000487_150 Hb_002173_080--Hb_000487_150 Hb_002173_080--Hb_003237_040 Hb_000318_440 Hb_000318_440 Hb_002173_080--Hb_000318_440 Hb_002173_080--Hb_004097_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0280643 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.947945 0.0661721

CAGE analysis