Hb_005180_010

Information

Type -
Description -
Location Contig5180: 20834-21352
Sequence    

Annotation

kegg
ID egr:104453409
description peptidyl-prolyl cis-trans isomerase
nr
ID ADV04050.1
description cyclophilin [Hevea brasiliensis]
swissprot
ID Q39613
description Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=1 SV=1
trembl
ID F8RW92
description Peptidyl-prolyl cis-trans isomerase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46551: 20769-21941
cDNA
(Sanger)
(ID:Location)		 003_B03.ab1: 20785-21539 , 005_M14.ab1: 20777-21540 , 008_K22.ab1: 20769-21460 , 015_E10.ab1: 20777-21498 , 019_E12.ab1: 20777-21500 , 024_K01.ab1: 20810-21511 , 025_C02.ab1: 20810-21535 , 028_O12.ab1: 20810-21471 , 031_F13.ab1: 20769-21585 , 035_F13.ab1: 20769-21522 , 035_M14.ab1: 20777-21542 , 040_D02.ab1: 20777-21540 , 042_H10.ab1: 20769-21450 , 044_H20.ab1: 20785-21538 , 052_A12.ab1: 20785-21506

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005180_010 0.0 - - cyclophilin [Hevea brasiliensis]
2 Hb_000251_040 0.1012475425 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
3 Hb_033772_070 0.1036163088 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
4 Hb_000008_090 0.118921135 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
5 Hb_008053_060 0.1199919265 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
6 Hb_002272_170 0.1235402278 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
7 Hb_007185_040 0.1254954879 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
8 Hb_000395_220 0.1289152565 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_001004_140 0.1298231264 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
10 Hb_005489_140 0.1314122307 - - PREDICTED: maspardin [Jatropha curcas]
11 Hb_006717_070 0.1352014201 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
12 Hb_107298_010 0.1353214583 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
13 Hb_009732_020 0.1374712281 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_003906_170 0.1386845817 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_003849_240 0.1400326743 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_089140_040 0.1407916107 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
17 Hb_007765_030 0.1417374997 - - PREDICTED: neutral ceramidase [Jatropha curcas]
18 Hb_007426_140 0.1437477206 - - ornithine aminotransferase, putative [Ricinus communis]
19 Hb_002596_060 0.1443133435 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002259_080 0.1445475944 - - protein transport protein sec23, putative [Ricinus communis]

Gene co-expression network

sample Hb_005180_010 Hb_005180_010 Hb_000251_040 Hb_000251_040 Hb_005180_010--Hb_000251_040 Hb_033772_070 Hb_033772_070 Hb_005180_010--Hb_033772_070 Hb_000008_090 Hb_000008_090 Hb_005180_010--Hb_000008_090 Hb_008053_060 Hb_008053_060 Hb_005180_010--Hb_008053_060 Hb_002272_170 Hb_002272_170 Hb_005180_010--Hb_002272_170 Hb_007185_040 Hb_007185_040 Hb_005180_010--Hb_007185_040 Hb_000251_040--Hb_002272_170 Hb_000251_040--Hb_000008_090 Hb_000174_140 Hb_000174_140 Hb_000251_040--Hb_000174_140 Hb_083799_010 Hb_083799_010 Hb_000251_040--Hb_083799_010 Hb_001004_140 Hb_001004_140 Hb_000251_040--Hb_001004_140 Hb_033772_070--Hb_002272_170 Hb_002836_100 Hb_002836_100 Hb_033772_070--Hb_002836_100 Hb_000395_220 Hb_000395_220 Hb_033772_070--Hb_000395_220 Hb_033772_070--Hb_000251_040 Hb_007426_140 Hb_007426_140 Hb_033772_070--Hb_007426_140 Hb_000008_090--Hb_001004_140 Hb_000008_090--Hb_000174_140 Hb_000260_660 Hb_000260_660 Hb_000008_090--Hb_000260_660 Hb_007257_060 Hb_007257_060 Hb_000008_090--Hb_007257_060 Hb_008053_060--Hb_001004_140 Hb_089140_040 Hb_089140_040 Hb_008053_060--Hb_089140_040 Hb_008053_060--Hb_007185_040 Hb_006468_010 Hb_006468_010 Hb_008053_060--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_008053_060--Hb_003636_080 Hb_005489_140 Hb_005489_140 Hb_008053_060--Hb_005489_140 Hb_002272_170--Hb_083799_010 Hb_002272_170--Hb_000395_220 Hb_000692_160 Hb_000692_160 Hb_002272_170--Hb_000692_160 Hb_002272_170--Hb_007426_140 Hb_172112_020 Hb_172112_020 Hb_007185_040--Hb_172112_020 Hb_007185_040--Hb_001004_140 Hb_002596_060 Hb_002596_060 Hb_007185_040--Hb_002596_060 Hb_010872_050 Hb_010872_050 Hb_007185_040--Hb_010872_050 Hb_016734_020 Hb_016734_020 Hb_007185_040--Hb_016734_020 Hb_107298_010 Hb_107298_010 Hb_007185_040--Hb_107298_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
237.956 870.394 821.453 789.188 572.271 400.126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
499.362 291.993 107.393 1630.61 303.193

CAGE analysis