Hb_005181_020

Information

Type -
Description -
Location Contig5181: 6030-7571
Sequence    

Annotation

kegg
ID rcu:RCOM_0726610
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_002523016.1
description Pectinesterase-2 precursor, putative [Ricinus communis]
swissprot
ID Q9LSP1
description Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1
trembl
ID B9SAJ7
description Pectinesterase OS=Ricinus communis GN=RCOM_0726610 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase 67

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_020 0.0 - - Pectinesterase-2 precursor, putative [Ricinus communis]
2 Hb_141199_010 0.0400370413 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_007416_380 0.1518307572 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
4 Hb_007904_050 0.1572513025 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
5 Hb_000069_390 0.1728980012 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
6 Hb_000574_520 0.1871104861 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
7 Hb_115823_010 0.2011145971 - - conserved hypothetical protein [Ricinus communis]
8 Hb_027402_030 0.2082960355 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
9 Hb_183612_020 0.2236407873 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
10 Hb_101393_010 0.2291390018 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002450_150 0.2365095572 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000107_670 0.26150685 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
13 Hb_002942_170 0.2749765292 - - acyl carrier protein, putative [Ricinus communis]
14 Hb_059295_010 0.2785341074 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
15 Hb_173638_010 0.2849980574 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_105478_010 0.2895788907 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
17 Hb_008147_110 0.2913206905 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
18 Hb_011224_090 0.2946814101 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]
19 Hb_001829_030 0.2998347428 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
20 Hb_003053_040 0.2999686543 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005181_020 Hb_005181_020 Hb_141199_010 Hb_141199_010 Hb_005181_020--Hb_141199_010 Hb_007416_380 Hb_007416_380 Hb_005181_020--Hb_007416_380 Hb_007904_050 Hb_007904_050 Hb_005181_020--Hb_007904_050 Hb_000069_390 Hb_000069_390 Hb_005181_020--Hb_000069_390 Hb_000574_520 Hb_000574_520 Hb_005181_020--Hb_000574_520 Hb_115823_010 Hb_115823_010 Hb_005181_020--Hb_115823_010 Hb_141199_010--Hb_007416_380 Hb_141199_010--Hb_000069_390 Hb_141199_010--Hb_000574_520 Hb_141199_010--Hb_007904_050 Hb_183612_020 Hb_183612_020 Hb_141199_010--Hb_183612_020 Hb_007416_380--Hb_000069_390 Hb_007416_380--Hb_000574_520 Hb_007416_380--Hb_183612_020 Hb_002450_150 Hb_002450_150 Hb_007416_380--Hb_002450_150 Hb_007904_050--Hb_115823_010 Hb_022425_020 Hb_022425_020 Hb_007904_050--Hb_022425_020 Hb_002942_170 Hb_002942_170 Hb_007904_050--Hb_002942_170 Hb_173638_010 Hb_173638_010 Hb_007904_050--Hb_173638_010 Hb_000069_390--Hb_000574_520 Hb_004449_160 Hb_004449_160 Hb_000069_390--Hb_004449_160 Hb_000069_390--Hb_002450_150 Hb_000574_520--Hb_183612_020 Hb_000574_520--Hb_002450_150 Hb_003894_090 Hb_003894_090 Hb_115823_010--Hb_003894_090 Hb_115823_010--Hb_002942_170 Hb_115823_010--Hb_022425_020 Hb_115823_010--Hb_141199_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0630529 0.0159448 0 0.0221955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis