Hb_005181_030

Information

Type -
Description -
Location Contig5181: 10459-12885
Sequence    

Annotation

kegg
ID rcu:RCOM_1000610
description hypothetical protein
nr
ID XP_012084066.1
description PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
swissprot
ID Q9CR41
description Huntingtin-interacting protein K OS=Mus musculus GN=Hypk PE=2 SV=2
trembl
ID A0A067K7W4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18989 PE=4 SV=1
Gene Ontology
ID GO:0005829
description huntingtin-interacting protein k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46553: 9173-9469 , PASA_asmbl_46554: 10500-13047 , PASA_asmbl_46555: 10850-11322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_030 0.0 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
2 Hb_001279_360 0.0683145185 - - protein with unknown function [Ricinus communis]
3 Hb_004459_040 0.0700603284 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
4 Hb_002687_170 0.0761886217 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
5 Hb_094608_010 0.0763713936 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
6 Hb_004157_030 0.0779712389 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
7 Hb_001085_120 0.078451056 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
8 Hb_006541_010 0.078896991 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
9 Hb_000103_010 0.0791526603 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
10 Hb_001158_230 0.0798093002 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
11 Hb_007012_060 0.080098547 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
12 Hb_002830_020 0.0808863042 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_001512_080 0.0838204108 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
14 Hb_000193_120 0.0840962705 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
15 Hb_001484_070 0.08421778 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005063_050 0.0842653874 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
17 Hb_003203_040 0.0847328493 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
18 Hb_143496_010 0.0847542019 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
19 Hb_017948_010 0.0848871023 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
20 Hb_007576_170 0.0852819599 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005181_030 Hb_005181_030 Hb_001279_360 Hb_001279_360 Hb_005181_030--Hb_001279_360 Hb_004459_040 Hb_004459_040 Hb_005181_030--Hb_004459_040 Hb_002687_170 Hb_002687_170 Hb_005181_030--Hb_002687_170 Hb_094608_010 Hb_094608_010 Hb_005181_030--Hb_094608_010 Hb_004157_030 Hb_004157_030 Hb_005181_030--Hb_004157_030 Hb_001085_120 Hb_001085_120 Hb_005181_030--Hb_001085_120 Hb_148200_010 Hb_148200_010 Hb_001279_360--Hb_148200_010 Hb_017948_010 Hb_017948_010 Hb_001279_360--Hb_017948_010 Hb_003053_030 Hb_003053_030 Hb_001279_360--Hb_003053_030 Hb_156947_010 Hb_156947_010 Hb_001279_360--Hb_156947_010 Hb_001433_050 Hb_001433_050 Hb_001279_360--Hb_001433_050 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_001158_230 Hb_001158_230 Hb_002687_170--Hb_001158_230 Hb_005474_060 Hb_005474_060 Hb_002687_170--Hb_005474_060 Hb_009421_040 Hb_009421_040 Hb_002687_170--Hb_009421_040 Hb_003994_040 Hb_003994_040 Hb_002687_170--Hb_003994_040 Hb_002830_020 Hb_002830_020 Hb_094608_010--Hb_002830_020 Hb_094608_010--Hb_007576_170 Hb_007012_060 Hb_007012_060 Hb_094608_010--Hb_007012_060 Hb_000877_020 Hb_000877_020 Hb_094608_010--Hb_000877_020 Hb_101705_030 Hb_101705_030 Hb_094608_010--Hb_101705_030 Hb_003226_100 Hb_003226_100 Hb_004157_030--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_004157_030--Hb_003018_020 Hb_001814_050 Hb_001814_050 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010 Hb_000453_120 Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.8096 9.73963 37.5754 36.1532 37.8478 50.9167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.2332 162.664 75.6516 45.4294 32.6995

CAGE analysis