Hb_005181_050

Information

Type -
Description -
Location Contig5181: 21696-29212
Sequence    

Annotation

kegg
ID rcu:RCOM_1000590
description phytochrome B, putative
nr
ID XP_012084068.1
description PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
swissprot
ID P29130
description Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2
trembl
ID A0A067JVA7
description Phytochrome OS=Jatropha curcas GN=JCGZ_18991 PE=3 SV=1
Gene Ontology
ID GO:0005622
description phytochrome b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46561: 21723-28740 , PASA_asmbl_46563: 27896-28650 , PASA_asmbl_46565: 30089-35894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_050 0.0 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
2 Hb_003124_270 0.0590452128 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
3 Hb_000167_120 0.0627098723 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
4 Hb_003680_020 0.0654857164 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_000125_180 0.070391414 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
6 Hb_000844_050 0.0728379548 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
7 Hb_000809_250 0.0734931919 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
8 Hb_004586_090 0.0738624837 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
9 Hb_004884_090 0.0764771693 - - importin beta-1, putative [Ricinus communis]
10 Hb_001691_200 0.0785342355 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
11 Hb_000960_080 0.0786603389 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
12 Hb_000059_240 0.0797059678 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
13 Hb_011925_020 0.0806022138 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_002609_080 0.081251228 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
15 Hb_033799_010 0.0822764734 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
16 Hb_007012_040 0.0831028222 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
17 Hb_001341_010 0.0850260563 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
18 Hb_006478_030 0.0866024485 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
19 Hb_001366_270 0.0866134713 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
20 Hb_001507_050 0.0881905457 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005181_050 Hb_005181_050 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_000844_050 Hb_000844_050 Hb_005181_050--Hb_000844_050 Hb_000809_250 Hb_000809_250 Hb_005181_050--Hb_000809_250 Hb_003124_270--Hb_000844_050 Hb_004884_090 Hb_004884_090 Hb_003124_270--Hb_004884_090 Hb_007012_040 Hb_007012_040 Hb_003124_270--Hb_007012_040 Hb_003124_270--Hb_000809_250 Hb_003124_270--Hb_003680_020 Hb_000167_120--Hb_000844_050 Hb_000167_120--Hb_003124_270 Hb_000025_500 Hb_000025_500 Hb_000167_120--Hb_000025_500 Hb_001998_150 Hb_001998_150 Hb_000167_120--Hb_001998_150 Hb_000167_120--Hb_003680_020 Hb_000960_080 Hb_000960_080 Hb_003680_020--Hb_000960_080 Hb_003680_020--Hb_000844_050 Hb_001507_050 Hb_001507_050 Hb_003680_020--Hb_001507_050 Hb_003661_010 Hb_003661_010 Hb_003680_020--Hb_003661_010 Hb_048476_080 Hb_048476_080 Hb_003680_020--Hb_048476_080 Hb_000059_240 Hb_000059_240 Hb_003680_020--Hb_000059_240 Hb_002235_310 Hb_002235_310 Hb_000125_180--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000125_180--Hb_000866_110 Hb_011925_020 Hb_011925_020 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_000125_180--Hb_000080_110 Hb_000844_050--Hb_048476_080 Hb_000844_050--Hb_003661_010 Hb_000844_050--Hb_000809_250 Hb_000844_050--Hb_001507_050 Hb_000809_250--Hb_003680_020 Hb_000809_250--Hb_001998_150 Hb_000809_250--Hb_003661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18775 13.3956 8.37042 10.5061 3.46084 4.95958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53908 3.48149 5.85595 14.1167 17.4203

CAGE analysis