Hb_005181_110

Information

Type -
Description -
Location Contig5181: 47564-56684
Sequence    

Annotation

kegg
ID rcu:RCOM_1000520
description hypothetical protein
nr
ID XP_012084079.1
description PREDICTED: FIP1[V]-like protein [Jatropha curcas]
swissprot
ID F4JC20
description FIP1[III]-like protein OS=Arabidopsis thaliana GN=FIPS3 PE=1 SV=1
trembl
ID B9RZQ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46567: 47670-47904 , PASA_asmbl_46568: 50750-51701 , PASA_asmbl_46569: 53803-54103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_110 0.0 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
2 Hb_000034_040 0.0878514999 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
3 Hb_006915_070 0.0905673842 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
4 Hb_012656_030 0.0908745676 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
5 Hb_002276_060 0.0936090733 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
6 Hb_000281_090 0.0950304683 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
7 Hb_002681_070 0.0959891626 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
8 Hb_003440_050 0.0963754924 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
9 Hb_000318_390 0.098838467 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
10 Hb_000101_240 0.1023336418 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
11 Hb_000193_310 0.1036146067 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
12 Hb_000920_060 0.1052698013 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
13 Hb_002890_020 0.1057368507 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
14 Hb_012022_070 0.1063401437 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
15 Hb_172632_080 0.1065904942 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
16 Hb_003938_080 0.1069308938 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
17 Hb_000345_170 0.1078405021 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
18 Hb_000856_110 0.1082505028 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
19 Hb_048476_180 0.1091602486 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
20 Hb_012799_030 0.1096946859 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]

Gene co-expression network

sample Hb_005181_110 Hb_005181_110 Hb_000034_040 Hb_000034_040 Hb_005181_110--Hb_000034_040 Hb_006915_070 Hb_006915_070 Hb_005181_110--Hb_006915_070 Hb_012656_030 Hb_012656_030 Hb_005181_110--Hb_012656_030 Hb_002276_060 Hb_002276_060 Hb_005181_110--Hb_002276_060 Hb_000281_090 Hb_000281_090 Hb_005181_110--Hb_000281_090 Hb_002681_070 Hb_002681_070 Hb_005181_110--Hb_002681_070 Hb_000034_040--Hb_006915_070 Hb_015884_030 Hb_015884_030 Hb_000034_040--Hb_015884_030 Hb_012799_030 Hb_012799_030 Hb_000034_040--Hb_012799_030 Hb_003938_080 Hb_003938_080 Hb_000034_040--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_000034_040--Hb_009411_010 Hb_000034_040--Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110 Hb_008500_010 Hb_008500_010 Hb_012656_030--Hb_008500_010 Hb_014267_010 Hb_014267_010 Hb_012656_030--Hb_014267_010 Hb_000318_390 Hb_000318_390 Hb_012656_030--Hb_000318_390 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_003440_050 Hb_003440_050 Hb_012656_030--Hb_003440_050 Hb_000170_190 Hb_000170_190 Hb_002276_060--Hb_000170_190 Hb_002276_060--Hb_000034_040 Hb_003001_150 Hb_003001_150 Hb_002276_060--Hb_003001_150 Hb_012286_010 Hb_012286_010 Hb_002276_060--Hb_012286_010 Hb_002193_010 Hb_002193_010 Hb_002276_060--Hb_002193_010 Hb_001205_230 Hb_001205_230 Hb_000281_090--Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_000281_090--Hb_027346_010 Hb_007943_110 Hb_007943_110 Hb_000281_090--Hb_007943_110 Hb_001008_120 Hb_001008_120 Hb_000281_090--Hb_001008_120 Hb_001004_060 Hb_001004_060 Hb_000281_090--Hb_001004_060 Hb_004162_090 Hb_004162_090 Hb_000281_090--Hb_004162_090 Hb_002681_070--Hb_008785_040 Hb_001019_190 Hb_001019_190 Hb_002681_070--Hb_001019_190 Hb_000819_080 Hb_000819_080 Hb_002681_070--Hb_000819_080 Hb_005496_130 Hb_005496_130 Hb_002681_070--Hb_005496_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04598 2.80052 1.03393 1.23733 4.05306 5.07354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72106 3.28286 2.84068 2.93509 4.55239

CAGE analysis