Hb_005183_050

Information

Type -
Description -
Location Contig5183: 27098-28674
Sequence    

Annotation

kegg
ID rcu:RCOM_1590900
description hypothetical protein
nr
ID XP_002510232.1
description hypothetical protein RCOM_1590900 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7D9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1590900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46588: 28168-28563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_050 0.0 - - hypothetical protein RCOM_1590900 [Ricinus communis]
2 Hb_001433_090 0.0589079284 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
3 Hb_000017_180 0.0592977141 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
4 Hb_000002_110 0.0750046644 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
5 Hb_003152_020 0.0756328328 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
6 Hb_026549_060 0.0769686197 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_005842_010 0.0777089005 - - nitrate transporter, putative [Ricinus communis]
8 Hb_001657_020 0.078260248 - - heat shock family protein [Populus trichocarpa]
9 Hb_001541_200 0.0803680618 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
10 Hb_001397_020 0.0807092489 - - cytochrome P450 family protein [Populus trichocarpa]
11 Hb_010589_010 0.0812179466 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
12 Hb_005000_150 0.0823245061 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001557_010 0.0859726576 - - PREDICTED: extensin [Jatropha curcas]
14 Hb_001512_130 0.0885282831 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
15 Hb_007163_110 0.0888365028 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
16 Hb_136408_040 0.0892930379 - - PREDICTED: protein NDR1 [Jatropha curcas]
17 Hb_020956_030 0.0910539551 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
18 Hb_001500_130 0.0911363728 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
19 Hb_000670_070 0.096578645 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
20 Hb_000083_210 0.0969166429 - - Major facilitator superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_005183_050 Hb_005183_050 Hb_001433_090 Hb_001433_090 Hb_005183_050--Hb_001433_090 Hb_000017_180 Hb_000017_180 Hb_005183_050--Hb_000017_180 Hb_000002_110 Hb_000002_110 Hb_005183_050--Hb_000002_110 Hb_003152_020 Hb_003152_020 Hb_005183_050--Hb_003152_020 Hb_026549_060 Hb_026549_060 Hb_005183_050--Hb_026549_060 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_001433_090--Hb_026549_060 Hb_001433_090--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001433_090--Hb_010589_010 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_020956_030 Hb_020956_030 Hb_001433_090--Hb_020956_030 Hb_002062_010 Hb_002062_010 Hb_000017_180--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_000017_180--Hb_003417_050 Hb_005656_120 Hb_005656_120 Hb_000017_180--Hb_005656_120 Hb_128986_010 Hb_128986_010 Hb_000017_180--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_000017_180--Hb_007483_090 Hb_000002_110--Hb_010589_010 Hb_000002_110--Hb_001500_130 Hb_001397_020 Hb_001397_020 Hb_000002_110--Hb_001397_020 Hb_000002_110--Hb_020956_030 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_001541_200 Hb_001541_200 Hb_026549_060--Hb_001541_200 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_026549_060--Hb_020956_030 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_006242_050 Hb_006242_050 Hb_005842_010--Hb_006242_050 Hb_000424_140 Hb_000424_140 Hb_005842_010--Hb_000424_140 Hb_005842_010--Hb_007163_110 Hb_000670_070 Hb_000670_070 Hb_005842_010--Hb_000670_070 Hb_009421_070 Hb_009421_070 Hb_005842_010--Hb_009421_070 Hb_027472_060 Hb_027472_060 Hb_005842_010--Hb_027472_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.117128 0.406439 1.12027 0 0.0119112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0485817 1.32463

CAGE analysis