Hb_005183_070

Information

Type -
Description -
Location Contig5183: 64311-68726
Sequence    

Annotation

kegg
ID sly:101261515
description calmodulin-like protein 5
nr
ID XP_010320533.1
description PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
swissprot
ID Q8RZB5
description Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1
trembl
ID A0A067H939
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039346mg PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_070 0.0 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
2 Hb_000197_260 0.0693054079 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
3 Hb_000368_040 0.0848041362 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_005588_050 0.0948923355 - - conserved hypothetical protein [Ricinus communis]
5 Hb_029665_010 0.0975813299 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_000317_170 0.0976119696 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_001680_050 0.0992993629 - - -
8 Hb_004625_020 0.099784958 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
9 Hb_180980_010 0.1012570147 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
10 Hb_000953_110 0.1016447182 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
11 Hb_007545_220 0.1018399497 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
12 Hb_000599_160 0.1025366843 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
13 Hb_004158_040 0.1053029044 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
14 Hb_000856_030 0.1056603905 - - ATP binding protein, putative [Ricinus communis]
15 Hb_152914_010 0.1080976465 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
16 Hb_000137_050 0.1083109545 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007579_030 0.1086084554 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_000307_060 0.1091344273 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
19 Hb_010217_020 0.1103836199 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
20 Hb_000087_190 0.1106190934 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]

Gene co-expression network

sample Hb_005183_070 Hb_005183_070 Hb_000197_260 Hb_000197_260 Hb_005183_070--Hb_000197_260 Hb_000368_040 Hb_000368_040 Hb_005183_070--Hb_000368_040 Hb_005588_050 Hb_005588_050 Hb_005183_070--Hb_005588_050 Hb_029665_010 Hb_029665_010 Hb_005183_070--Hb_029665_010 Hb_000317_170 Hb_000317_170 Hb_005183_070--Hb_000317_170 Hb_001680_050 Hb_001680_050 Hb_005183_070--Hb_001680_050 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_000197_260--Hb_029665_010 Hb_000197_260--Hb_001680_050 Hb_002186_110 Hb_002186_110 Hb_000197_260--Hb_002186_110 Hb_007579_030 Hb_007579_030 Hb_000197_260--Hb_007579_030 Hb_000856_030 Hb_000856_030 Hb_000368_040--Hb_000856_030 Hb_000368_040--Hb_001680_050 Hb_000009_250 Hb_000009_250 Hb_000368_040--Hb_000009_250 Hb_000368_040--Hb_029665_010 Hb_000368_040--Hb_000317_170 Hb_004158_040 Hb_004158_040 Hb_005588_050--Hb_004158_040 Hb_001541_170 Hb_001541_170 Hb_005588_050--Hb_001541_170 Hb_001722_110 Hb_001722_110 Hb_005588_050--Hb_001722_110 Hb_001579_160 Hb_001579_160 Hb_005588_050--Hb_001579_160 Hb_012787_020 Hb_012787_020 Hb_005588_050--Hb_012787_020 Hb_000580_210 Hb_000580_210 Hb_005588_050--Hb_000580_210 Hb_029665_010--Hb_001680_050 Hb_029665_010--Hb_007579_030 Hb_001401_120 Hb_001401_120 Hb_029665_010--Hb_001401_120 Hb_000000_260 Hb_000000_260 Hb_000317_170--Hb_000000_260 Hb_000317_170--Hb_001680_050 Hb_000317_170--Hb_000856_030 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_029791_010 Hb_029791_010 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160 Hb_001680_050--Hb_007579_030 Hb_001680_050--Hb_000856_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.91667 2.7855 50.3268 0.568631 0.26973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.110513 0 1.10566 15.5999

CAGE analysis