Hb_005183_100

Information

Type -
Description -
Location Contig5183: 72573-74699
Sequence    

Annotation

kegg
ID cic:CICLE_v10002898mg
description hypothetical protein
nr
ID XP_006434792.1
description hypothetical protein CICLE_v10002898mg [Citrus clementina]
swissprot
ID Q9SRP4
description Probable calcium-binding protein CML33 OS=Arabidopsis thaliana GN=CML33 PE=2 SV=1
trembl
ID F6GZZ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10600 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_100 0.0 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
2 Hb_005723_090 0.0433112195 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001206_100 0.0611865217 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
4 Hb_016277_030 0.0620747499 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
5 Hb_009522_020 0.0739607403 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
6 Hb_005057_030 0.0766217281 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_000000_290 0.081614306 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
8 Hb_000622_030 0.0847253751 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
9 Hb_000271_130 0.0901057659 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
10 Hb_001296_060 0.091420141 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
11 Hb_000120_480 0.0914816646 - - -
12 Hb_004374_030 0.0957449241 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_001158_250 0.0962981433 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009421_070 0.0992207675 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
15 Hb_004032_190 0.1032355216 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
16 Hb_001369_390 0.1056806316 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
17 Hb_000784_060 0.1112259789 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002095_020 0.1116162757 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
19 Hb_001305_020 0.1117692143 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
20 Hb_002119_110 0.1123146677 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]

Gene co-expression network

sample Hb_005183_100 Hb_005183_100 Hb_005723_090 Hb_005723_090 Hb_005183_100--Hb_005723_090 Hb_001206_100 Hb_001206_100 Hb_005183_100--Hb_001206_100 Hb_016277_030 Hb_016277_030 Hb_005183_100--Hb_016277_030 Hb_009522_020 Hb_009522_020 Hb_005183_100--Hb_009522_020 Hb_005057_030 Hb_005057_030 Hb_005183_100--Hb_005057_030 Hb_000000_290 Hb_000000_290 Hb_005183_100--Hb_000000_290 Hb_005723_090--Hb_005057_030 Hb_000120_480 Hb_000120_480 Hb_005723_090--Hb_000120_480 Hb_000622_030 Hb_000622_030 Hb_005723_090--Hb_000622_030 Hb_001158_250 Hb_001158_250 Hb_005723_090--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_005723_090--Hb_001305_020 Hb_009421_070 Hb_009421_070 Hb_001206_100--Hb_009421_070 Hb_002942_200 Hb_002942_200 Hb_001206_100--Hb_002942_200 Hb_001206_100--Hb_009522_020 Hb_001206_100--Hb_016277_030 Hb_004032_190 Hb_004032_190 Hb_001206_100--Hb_004032_190 Hb_004374_030 Hb_004374_030 Hb_016277_030--Hb_004374_030 Hb_004466_090 Hb_004466_090 Hb_016277_030--Hb_004466_090 Hb_016277_030--Hb_004032_190 Hb_000784_060 Hb_000784_060 Hb_016277_030--Hb_000784_060 Hb_010222_060 Hb_010222_060 Hb_009522_020--Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_009522_020--Hb_013394_120 Hb_173387_010 Hb_173387_010 Hb_009522_020--Hb_173387_010 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060 Hb_125961_010 Hb_125961_010 Hb_005057_030--Hb_125961_010 Hb_005057_030--Hb_000120_480 Hb_002713_060 Hb_002713_060 Hb_005057_030--Hb_002713_060 Hb_003226_230 Hb_003226_230 Hb_005057_030--Hb_003226_230 Hb_000023_180 Hb_000023_180 Hb_000000_290--Hb_000023_180 Hb_000000_290--Hb_000622_030 Hb_000000_290--Hb_005723_090 Hb_002835_070 Hb_002835_070 Hb_000000_290--Hb_002835_070 Hb_000000_290--Hb_016277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.445019 0.481797 1.42372 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.184277 1.6421

CAGE analysis