Hb_005183_120

Information

Type -
Description -
Location Contig5183: 81190-85821
Sequence    

Annotation

kegg
ID rcu:RCOM_1590720
description protein translocase, putative
nr
ID XP_002510224.1
description protein translocase, putative [Ricinus communis]
swissprot
ID Q9SZB2
description Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1
trembl
ID B9R7D1
description Protein translocase, putative OS=Ricinus communis GN=RCOM_1590720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46591: 81219-85672 , PASA_asmbl_46592: 81283-85672 , PASA_asmbl_46593: 84746-85137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_120 0.0 - - protein translocase, putative [Ricinus communis]
2 Hb_000676_150 0.071451004 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
3 Hb_000985_030 0.0788344242 - - PREDICTED: RRP15-like protein [Populus euphratica]
4 Hb_000165_160 0.0798365313 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
5 Hb_001489_080 0.0810264605 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_001545_080 0.0841964126 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
7 Hb_000783_020 0.0849970363 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
8 Hb_001902_140 0.0863823855 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
9 Hb_127552_030 0.0877372493 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_000143_030 0.0891052936 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
11 Hb_003053_020 0.0893654709 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
12 Hb_015934_070 0.0897733265 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
13 Hb_000815_070 0.0903064091 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
14 Hb_002374_100 0.0915381554 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
15 Hb_001726_020 0.0918397596 - - PREDICTED: endophilin-A1 [Jatropha curcas]
16 Hb_001619_070 0.0930832885 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
17 Hb_003688_150 0.0935104814 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
18 Hb_004116_140 0.0954286597 - - nuclear transcription factor, X-box binding, putative [Ricinus communis]
19 Hb_000334_150 0.0956220757 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001507_040 0.0960924038 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005183_120 Hb_005183_120 Hb_000676_150 Hb_000676_150 Hb_005183_120--Hb_000676_150 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_000165_160 Hb_000165_160 Hb_005183_120--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_005183_120--Hb_001489_080 Hb_001545_080 Hb_001545_080 Hb_005183_120--Hb_001545_080 Hb_000783_020 Hb_000783_020 Hb_005183_120--Hb_000783_020 Hb_034380_020 Hb_034380_020 Hb_000676_150--Hb_034380_020 Hb_000482_090 Hb_000482_090 Hb_000676_150--Hb_000482_090 Hb_011942_090 Hb_011942_090 Hb_000676_150--Hb_011942_090 Hb_000676_150--Hb_000165_160 Hb_127552_030 Hb_127552_030 Hb_000676_150--Hb_127552_030 Hb_000985_030--Hb_001489_080 Hb_002169_040 Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000985_030--Hb_000783_020 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_002799_070 Hb_002799_070 Hb_000165_160--Hb_002799_070 Hb_001507_040 Hb_001507_040 Hb_000165_160--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_000165_160--Hb_000445_040 Hb_000165_160--Hb_000783_020 Hb_000334_150 Hb_000334_150 Hb_000165_160--Hb_000334_150 Hb_001489_080--Hb_004934_100 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_001489_080--Hb_002169_040 Hb_003050_220 Hb_003050_220 Hb_001545_080--Hb_003050_220 Hb_155159_030 Hb_155159_030 Hb_001545_080--Hb_155159_030 Hb_001545_080--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_001545_080--Hb_006907_130 Hb_001006_190 Hb_001006_190 Hb_001545_080--Hb_001006_190 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_003697_040 Hb_003697_040 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7651 4.77899 8.85646 7.3989 8.7842 11.0835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2387 15.6339 22.271 14.7914 12.7202

CAGE analysis