Hb_005183_130

Information

Type -
Description -
Location Contig5183: 87670-90544
Sequence    

Annotation

kegg
ID rcu:RCOM_1590700
description glycogenin, putative (EC:2.4.1.186)
nr
ID XP_002510223.1
description glycogenin, putative [Ricinus communis]
swissprot
ID Q8GWW4
description UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1
trembl
ID B9R7D0
description Hexosyltransferase OS=Ricinus communis GN=RCOM_1590700 PE=3 SV=1
Gene Ontology
ID GO:0005794
description udp-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46594: 87675-88577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_130 0.0 - - glycogenin, putative [Ricinus communis]
2 Hb_000176_080 0.1093751984 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
3 Hb_004586_440 0.1166610894 - - Blue copper protein precursor, putative [Ricinus communis]
4 Hb_000482_080 0.1184477762 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
5 Hb_000020_140 0.120767388 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
6 Hb_001001_070 0.1226918267 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
7 Hb_000449_070 0.1259942689 - - unnamed protein product [Vitis vinifera]
8 Hb_000108_180 0.1265271703 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
9 Hb_008762_010 0.1294726438 - - dopamine beta-monooxygenase, putative [Ricinus communis]
10 Hb_000251_120 0.129672464 - - O-acetyltransferase, putative [Ricinus communis]
11 Hb_002171_050 0.1297866548 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
12 Hb_001096_010 0.1328421381 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
13 Hb_001195_710 0.13334868 - - glycosyltransferase family GT8 protein [Populus deltoides]
14 Hb_000580_210 0.1350918266 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
15 Hb_001225_050 0.1358811 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
16 Hb_000368_040 0.1390062019 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_003623_040 0.1391419335 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
18 Hb_001279_400 0.1405046319 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
19 Hb_005614_020 0.1406897863 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
20 Hb_000173_180 0.1419714643 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005183_130 Hb_005183_130 Hb_000176_080 Hb_000176_080 Hb_005183_130--Hb_000176_080 Hb_004586_440 Hb_004586_440 Hb_005183_130--Hb_004586_440 Hb_000482_080 Hb_000482_080 Hb_005183_130--Hb_000482_080 Hb_000020_140 Hb_000020_140 Hb_005183_130--Hb_000020_140 Hb_001001_070 Hb_001001_070 Hb_005183_130--Hb_001001_070 Hb_000449_070 Hb_000449_070 Hb_005183_130--Hb_000449_070 Hb_003623_040 Hb_003623_040 Hb_000176_080--Hb_003623_040 Hb_000108_180 Hb_000108_180 Hb_000176_080--Hb_000108_180 Hb_025645_020 Hb_025645_020 Hb_000176_080--Hb_025645_020 Hb_000030_130 Hb_000030_130 Hb_000176_080--Hb_000030_130 Hb_000251_120 Hb_000251_120 Hb_000176_080--Hb_000251_120 Hb_000608_090 Hb_000608_090 Hb_004586_440--Hb_000608_090 Hb_001369_480 Hb_001369_480 Hb_004586_440--Hb_001369_480 Hb_000362_030 Hb_000362_030 Hb_004586_440--Hb_000362_030 Hb_071079_040 Hb_071079_040 Hb_004586_440--Hb_071079_040 Hb_031330_010 Hb_031330_010 Hb_004586_440--Hb_031330_010 Hb_011224_070 Hb_011224_070 Hb_004586_440--Hb_011224_070 Hb_000482_080--Hb_000362_030 Hb_000580_210 Hb_000580_210 Hb_000482_080--Hb_000580_210 Hb_004657_070 Hb_004657_070 Hb_000482_080--Hb_004657_070 Hb_000482_080--Hb_004586_440 Hb_000482_080--Hb_000608_090 Hb_000020_140--Hb_000449_070 Hb_049453_010 Hb_049453_010 Hb_000020_140--Hb_049453_010 Hb_006252_070 Hb_006252_070 Hb_000020_140--Hb_006252_070 Hb_006386_010 Hb_006386_010 Hb_000020_140--Hb_006386_010 Hb_002171_050 Hb_002171_050 Hb_000020_140--Hb_002171_050 Hb_004625_020 Hb_004625_020 Hb_000020_140--Hb_004625_020 Hb_001001_070--Hb_000251_120 Hb_008461_060 Hb_008461_060 Hb_001001_070--Hb_008461_060 Hb_001001_070--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_001001_070--Hb_003177_040 Hb_002081_020 Hb_002081_020 Hb_001001_070--Hb_002081_020 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030 Hb_000449_070--Hb_002171_050 Hb_004020_030 Hb_004020_030 Hb_000449_070--Hb_004020_030 Hb_002997_150 Hb_002997_150 Hb_000449_070--Hb_002997_150 Hb_000449_070--Hb_071079_040 Hb_000449_070--Hb_011224_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.713179 2.85249 2.21802 34.9477 0.678497 0.569486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.284857 0.172412 0.0981537 1.02864 14.2214

CAGE analysis