Hb_005183_140

Information

Type -
Description -
Location Contig5183: 94185-100698
Sequence    

Annotation

kegg
ID rcu:RCOM_1590690
description Paramyosin, putative
nr
ID XP_012071665.1
description PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
swissprot
ID O48724
description Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1
trembl
ID A0A067KQ57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46596: 94075-100786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_140 0.0 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
2 Hb_000340_360 0.0946490305 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
3 Hb_000404_030 0.0973778091 - - PREDICTED: protein NAP1 [Jatropha curcas]
4 Hb_014006_010 0.0995000372 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
5 Hb_002249_030 0.1073232431 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
6 Hb_001499_070 0.1077233452 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
7 Hb_006794_020 0.1094645468 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
8 Hb_013358_060 0.1105857181 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
9 Hb_013405_180 0.1136034001 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
10 Hb_002078_470 0.1145207094 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
11 Hb_002400_160 0.1153237663 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
12 Hb_002482_030 0.1159745207 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
13 Hb_004551_020 0.1164298213 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
14 Hb_002918_320 0.1174121587 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
15 Hb_002248_120 0.1174524668 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
16 Hb_187005_010 0.1177172612 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
17 Hb_000170_160 0.1196507447 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
18 Hb_000175_270 0.1221145172 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
19 Hb_005885_030 0.1228325372 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_021079_020 0.1257692809 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]

Gene co-expression network

sample Hb_005183_140 Hb_005183_140 Hb_000340_360 Hb_000340_360 Hb_005183_140--Hb_000340_360 Hb_000404_030 Hb_000404_030 Hb_005183_140--Hb_000404_030 Hb_014006_010 Hb_014006_010 Hb_005183_140--Hb_014006_010 Hb_002249_030 Hb_002249_030 Hb_005183_140--Hb_002249_030 Hb_001499_070 Hb_001499_070 Hb_005183_140--Hb_001499_070 Hb_006794_020 Hb_006794_020 Hb_005183_140--Hb_006794_020 Hb_000340_360--Hb_014006_010 Hb_000369_080 Hb_000369_080 Hb_000340_360--Hb_000369_080 Hb_001951_100 Hb_001951_100 Hb_000340_360--Hb_001951_100 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_013399_090 Hb_013399_090 Hb_000340_360--Hb_013399_090 Hb_000586_020 Hb_000586_020 Hb_000404_030--Hb_000586_020 Hb_000404_030--Hb_002249_030 Hb_002078_470 Hb_002078_470 Hb_000404_030--Hb_002078_470 Hb_001178_030 Hb_001178_030 Hb_000404_030--Hb_001178_030 Hb_009158_060 Hb_009158_060 Hb_000404_030--Hb_009158_060 Hb_013358_060 Hb_013358_060 Hb_000404_030--Hb_013358_060 Hb_014006_010--Hb_013399_090 Hb_004586_090 Hb_004586_090 Hb_014006_010--Hb_004586_090 Hb_014006_010--Hb_002078_470 Hb_000221_180 Hb_000221_180 Hb_014006_010--Hb_000221_180 Hb_000154_130 Hb_000154_130 Hb_014006_010--Hb_000154_130 Hb_011616_040 Hb_011616_040 Hb_002249_030--Hb_011616_040 Hb_002249_030--Hb_001178_030 Hb_000008_280 Hb_000008_280 Hb_002249_030--Hb_000008_280 Hb_002600_070 Hb_002600_070 Hb_002249_030--Hb_002600_070 Hb_000771_170 Hb_000771_170 Hb_002249_030--Hb_000771_170 Hb_187005_010 Hb_187005_010 Hb_001499_070--Hb_187005_010 Hb_000175_270 Hb_000175_270 Hb_001499_070--Hb_000175_270 Hb_007290_070 Hb_007290_070 Hb_001499_070--Hb_007290_070 Hb_001514_240 Hb_001514_240 Hb_001499_070--Hb_001514_240 Hb_013968_010 Hb_013968_010 Hb_001499_070--Hb_013968_010 Hb_001408_020 Hb_001408_020 Hb_001499_070--Hb_001408_020 Hb_006794_020--Hb_013358_060 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_005885_030 Hb_005885_030 Hb_006794_020--Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_006794_020--Hb_010775_010 Hb_000331_100 Hb_000331_100 Hb_006794_020--Hb_000331_100 Hb_000270_700 Hb_000270_700 Hb_006794_020--Hb_000270_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.06648 42.6658 24.3527 11.5397 7.54308 6.1172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.43086 5.8317 6.1408 14.1351 33.0956

CAGE analysis