Hb_005183_150

Information

Type -
Description -
Location Contig5183: 102738-106336
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02950g
description hypothetical protein
nr
ID XP_012080736.1
description PREDICTED: protein CYPRO4 [Jatropha curcas]
swissprot
ID P40781
description Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1
trembl
ID A0A067K3T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15191 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cypro4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46598: 102489-106231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_150 0.0 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
2 Hb_007632_210 0.0777220056 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
3 Hb_033041_010 0.0822871773 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
4 Hb_003360_010 0.0956732135 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
5 Hb_001524_120 0.0976174121 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
6 Hb_007632_080 0.0984727798 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
7 Hb_124677_050 0.1013761101 - - conserved hypothetical protein [Ricinus communis]
8 Hb_020301_020 0.1033491907 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_001454_270 0.1048246699 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
10 Hb_101133_050 0.1063152637 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
11 Hb_005542_150 0.1069830239 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
12 Hb_000260_670 0.1070475849 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
13 Hb_000661_150 0.11015846 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
14 Hb_001584_360 0.1121080875 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
15 Hb_000954_040 0.1131454596 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
16 Hb_003106_090 0.1160067446 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
17 Hb_003228_050 0.1167407651 - - chromomethylase [Hevea brasiliensis]
18 Hb_000334_120 0.1169463095 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
19 Hb_001688_100 0.1169787954 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
20 Hb_005276_090 0.1195402054 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005183_150 Hb_005183_150 Hb_007632_210 Hb_007632_210 Hb_005183_150--Hb_007632_210 Hb_033041_010 Hb_033041_010 Hb_005183_150--Hb_033041_010 Hb_003360_010 Hb_003360_010 Hb_005183_150--Hb_003360_010 Hb_001524_120 Hb_001524_120 Hb_005183_150--Hb_001524_120 Hb_007632_080 Hb_007632_080 Hb_005183_150--Hb_007632_080 Hb_124677_050 Hb_124677_050 Hb_005183_150--Hb_124677_050 Hb_007632_210--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_007632_210--Hb_000661_150 Hb_002311_090 Hb_002311_090 Hb_007632_210--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_007632_210--Hb_003228_050 Hb_101133_050 Hb_101133_050 Hb_007632_210--Hb_101133_050 Hb_033041_010--Hb_007632_080 Hb_000334_120 Hb_000334_120 Hb_033041_010--Hb_000334_120 Hb_033041_010--Hb_101133_050 Hb_000028_530 Hb_000028_530 Hb_033041_010--Hb_000028_530 Hb_005276_090 Hb_005276_090 Hb_033041_010--Hb_005276_090 Hb_024682_030 Hb_024682_030 Hb_003360_010--Hb_024682_030 Hb_000260_670 Hb_000260_670 Hb_003360_010--Hb_000260_670 Hb_000431_100 Hb_000431_100 Hb_003360_010--Hb_000431_100 Hb_003360_010--Hb_124677_050 Hb_003360_010--Hb_001524_120 Hb_001524_120--Hb_000431_100 Hb_003813_090 Hb_003813_090 Hb_001524_120--Hb_003813_090 Hb_001524_120--Hb_024682_030 Hb_001524_120--Hb_003228_050 Hb_003109_010 Hb_003109_010 Hb_007632_080--Hb_003109_010 Hb_007632_080--Hb_000028_530 Hb_007632_080--Hb_101133_050 Hb_007632_080--Hb_000334_120 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_124677_050--Hb_002311_090 Hb_124677_050--Hb_003228_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0291481 0.284009 8.74872 5.17611 0.0285544 0.0619781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.088314 0.0868607 0.263684 1.96938 0.918371

CAGE analysis