Hb_005183_170

Information

Type -
Description -
Location Contig5183: 118587-125241
Sequence    

Annotation

kegg
ID rcu:RCOM_1590660
description pentatricopeptide repeat-containing protein, putative (EC:3.2.1.60)
nr
ID XP_012071986.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
swissprot
ID Q9SJ73
description Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=3
trembl
ID B9R7C6
description Alpha-amylase OS=Ricinus communis GN=RCOM_1590660 PE=3 SV=1
Gene Ontology
ID GO:0004556
description pentatricopeptide repeat-containing protein at2g04860

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46599: 120967-122715 , PASA_asmbl_46600: 123638-124773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
2 Hb_183610_010 0.1137266251 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
3 Hb_000984_310 0.119698101 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
4 Hb_003617_020 0.1320487132 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
5 Hb_004117_120 0.1325123535 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
6 Hb_001486_190 0.1325182313 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
7 Hb_011671_080 0.1494330695 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
8 Hb_000172_100 0.1501102418 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
9 Hb_000679_230 0.1510689712 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
10 Hb_005408_060 0.1514429717 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
11 Hb_001766_080 0.1518282203 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
12 Hb_001357_040 0.1523826806 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
13 Hb_000748_030 0.1526657647 - - ATP binding protein, putative [Ricinus communis]
14 Hb_005051_020 0.1560234548 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
15 Hb_000853_200 0.1593580179 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
16 Hb_012651_010 0.1616683341 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
17 Hb_002102_030 0.1627999639 - - -
18 Hb_007153_050 0.16375953 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
19 Hb_002046_150 0.1647304361 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
20 Hb_050454_010 0.1655418327 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]

Gene co-expression network

sample Hb_005183_170 Hb_005183_170 Hb_183610_010 Hb_183610_010 Hb_005183_170--Hb_183610_010 Hb_000984_310 Hb_000984_310 Hb_005183_170--Hb_000984_310 Hb_003617_020 Hb_003617_020 Hb_005183_170--Hb_003617_020 Hb_004117_120 Hb_004117_120 Hb_005183_170--Hb_004117_120 Hb_001486_190 Hb_001486_190 Hb_005183_170--Hb_001486_190 Hb_011671_080 Hb_011671_080 Hb_005183_170--Hb_011671_080 Hb_183610_010--Hb_004117_120 Hb_183610_010--Hb_000984_310 Hb_001217_040 Hb_001217_040 Hb_183610_010--Hb_001217_040 Hb_000291_160 Hb_000291_160 Hb_183610_010--Hb_000291_160 Hb_000482_020 Hb_000482_020 Hb_183610_010--Hb_000482_020 Hb_000984_310--Hb_001486_190 Hb_001051_070 Hb_001051_070 Hb_000984_310--Hb_001051_070 Hb_012651_010 Hb_012651_010 Hb_000984_310--Hb_012651_010 Hb_000836_280 Hb_000836_280 Hb_000984_310--Hb_000836_280 Hb_000679_100 Hb_000679_100 Hb_000984_310--Hb_000679_100 Hb_000140_350 Hb_000140_350 Hb_000984_310--Hb_000140_350 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_001357_040 Hb_001357_040 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_000072_120 Hb_000072_120 Hb_003617_020--Hb_000072_120 Hb_024074_020 Hb_024074_020 Hb_004117_120--Hb_024074_020 Hb_004117_120--Hb_000984_310 Hb_004117_120--Hb_000291_160 Hb_162547_010 Hb_162547_010 Hb_004117_120--Hb_162547_010 Hb_000748_030 Hb_000748_030 Hb_001486_190--Hb_000748_030 Hb_000853_200 Hb_000853_200 Hb_001486_190--Hb_000853_200 Hb_146051_010 Hb_146051_010 Hb_001486_190--Hb_146051_010 Hb_000172_100 Hb_000172_100 Hb_001486_190--Hb_000172_100 Hb_000359_310 Hb_000359_310 Hb_011671_080--Hb_000359_310 Hb_004088_040 Hb_004088_040 Hb_011671_080--Hb_004088_040 Hb_001609_040 Hb_001609_040 Hb_011671_080--Hb_001609_040 Hb_000370_020 Hb_000370_020 Hb_011671_080--Hb_000370_020 Hb_000742_020 Hb_000742_020 Hb_011671_080--Hb_000742_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83084 1.58957 0.706129 4.20627 1.01436 1.08411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.607165 0.803965 2.64004 0.999897 1.12308

CAGE analysis