Hb_005183_180

Information

Type -
Description -
Location Contig5183: 126853-127615
Sequence    

Annotation

kegg
ID pop:POPTR_0515s00220g
description alpha amylase family protein
nr
ID XP_006387870.1
description alpha amylase family protein [Populus trichocarpa]
swissprot
ID P17859
description Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1
trembl
ID U7DX78
description Alpha-amylase OS=Populus trichocarpa GN=POPTR_0515s00220g PE=3 SV=1
Gene Ontology
ID GO:0016798
description alpha amylase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_180 0.0 - - alpha amylase family protein [Populus trichocarpa]
2 Hb_027472_200 0.2101874026 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_100451_010 0.2114196438 - - -
4 Hb_003938_040 0.2207542293 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
5 Hb_007108_060 0.2329643886 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000251_140 0.2366676307 - - leucine-rich repeat containing protein, putative [Ricinus communis]
7 Hb_000976_200 0.2764486941 - - -
8 Hb_006995_030 0.2852863669 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
9 Hb_113541_010 0.2935483245 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
10 Hb_003226_270 0.3013569858 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
11 Hb_130470_010 0.301666516 - - hypothetical protein, partial [Pseudomonas tolaasii]
12 Hb_002400_430 0.3018906251 - - -
13 Hb_163434_010 0.3080801694 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
14 Hb_108331_010 0.3098819171 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
15 Hb_085438_010 0.3134952559 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
16 Hb_002431_070 0.3135609906 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
17 Hb_004730_030 0.3137508307 - - synaptonemal complex protein, putative [Ricinus communis]
18 Hb_000788_140 0.3155783989 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000676_210 0.3159180992 - - Cytochrome P450 superfamily protein [Theobroma cacao]
20 Hb_003207_140 0.3161279546 - - PREDICTED: protein HOTHEAD [Jatropha curcas]

Gene co-expression network

sample Hb_005183_180 Hb_005183_180 Hb_027472_200 Hb_027472_200 Hb_005183_180--Hb_027472_200 Hb_100451_010 Hb_100451_010 Hb_005183_180--Hb_100451_010 Hb_003938_040 Hb_003938_040 Hb_005183_180--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_005183_180--Hb_007108_060 Hb_000251_140 Hb_000251_140 Hb_005183_180--Hb_000251_140 Hb_000976_200 Hb_000976_200 Hb_005183_180--Hb_000976_200 Hb_027472_200--Hb_100451_010 Hb_027472_200--Hb_003938_040 Hb_027472_200--Hb_007108_060 Hb_006995_030 Hb_006995_030 Hb_027472_200--Hb_006995_030 Hb_002400_430 Hb_002400_430 Hb_027472_200--Hb_002400_430 Hb_100451_010--Hb_003938_040 Hb_100451_010--Hb_007108_060 Hb_100451_010--Hb_006995_030 Hb_003226_270 Hb_003226_270 Hb_100451_010--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_100451_010--Hb_130470_010 Hb_003938_040--Hb_007108_060 Hb_003938_040--Hb_006995_030 Hb_003938_040--Hb_003226_270 Hb_003938_040--Hb_130470_010 Hb_007108_060--Hb_006995_030 Hb_007108_060--Hb_003226_270 Hb_007108_060--Hb_130470_010 Hb_002805_010 Hb_002805_010 Hb_000251_140--Hb_002805_010 Hb_000251_140--Hb_027472_200 Hb_000419_110 Hb_000419_110 Hb_000251_140--Hb_000419_110 Hb_000749_100 Hb_000749_100 Hb_000251_140--Hb_000749_100 Hb_000251_140--Hb_100451_010 Hb_004511_060 Hb_004511_060 Hb_000976_200--Hb_004511_060 Hb_113541_010 Hb_113541_010 Hb_000976_200--Hb_113541_010 Hb_000340_540 Hb_000340_540 Hb_000976_200--Hb_000340_540 Hb_111854_010 Hb_111854_010 Hb_000976_200--Hb_111854_010 Hb_162086_010 Hb_162086_010 Hb_000976_200--Hb_162086_010 Hb_003927_060 Hb_003927_060 Hb_000976_200--Hb_003927_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0314578 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.203324 0 0 0.133266

CAGE analysis