Hb_005183_200

Information

Type -
Description -
Location Contig5183: 131013-132068
Sequence    

Annotation

kegg
ID rcu:RCOM_1590640
description sterol carrier, putative
nr
ID AGT97331.1
description EG964 [Manihot glaziovii]
swissprot
ID P97852
description Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus GN=Hsd17b4 PE=1 SV=3
trembl
ID U3GMZ5
description EG964 OS=Manihot glaziovii GN=EG964 PE=2 SV=1
Gene Ontology
ID GO:0005777
description eg964

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_200 0.0 - - EG964 [Manihot glaziovii]
2 Hb_003430_020 0.0919588448 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
3 Hb_001515_050 0.1060656265 - - PREDICTED: uncharacterized protein LOC105636626 [Jatropha curcas]
4 Hb_003439_020 0.1099677111 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
5 Hb_009581_040 0.1186641095 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
6 Hb_052764_080 0.1239754085 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
7 Hb_074312_020 0.1280434652 - - cytochrome P450, putative [Ricinus communis]
8 Hb_073171_010 0.1282343544 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
9 Hb_134017_010 0.1289821925 - - kinase, putative [Ricinus communis]
10 Hb_022501_020 0.129627273 - - AMP dependent CoA ligase, putative [Ricinus communis]
11 Hb_002276_100 0.1308678497 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
12 Hb_004044_030 0.1310140481 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
13 Hb_000907_120 0.1320861421 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
14 Hb_084127_010 0.1332859523 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_001259_100 0.1335711642 - - chloride channel-like family protein [Populus trichocarpa]
16 Hb_008226_120 0.1343796611 - - ATP binding protein, putative [Ricinus communis]
17 Hb_001862_060 0.1351279675 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
18 Hb_008406_020 0.1369836699 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
19 Hb_003439_090 0.137625446 - - kinase, putative [Ricinus communis]
20 Hb_006364_020 0.1385834759 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]

Gene co-expression network

sample Hb_005183_200 Hb_005183_200 Hb_003430_020 Hb_003430_020 Hb_005183_200--Hb_003430_020 Hb_001515_050 Hb_001515_050 Hb_005183_200--Hb_001515_050 Hb_003439_020 Hb_003439_020 Hb_005183_200--Hb_003439_020 Hb_009581_040 Hb_009581_040 Hb_005183_200--Hb_009581_040 Hb_052764_080 Hb_052764_080 Hb_005183_200--Hb_052764_080 Hb_074312_020 Hb_074312_020 Hb_005183_200--Hb_074312_020 Hb_003430_020--Hb_009581_040 Hb_134017_010 Hb_134017_010 Hb_003430_020--Hb_134017_010 Hb_009581_050 Hb_009581_050 Hb_003430_020--Hb_009581_050 Hb_003439_090 Hb_003439_090 Hb_003430_020--Hb_003439_090 Hb_012807_060 Hb_012807_060 Hb_003430_020--Hb_012807_060 Hb_001515_050--Hb_003430_020 Hb_000856_240 Hb_000856_240 Hb_001515_050--Hb_000856_240 Hb_001515_050--Hb_003439_020 Hb_000255_020 Hb_000255_020 Hb_001515_050--Hb_000255_020 Hb_000045_180 Hb_000045_180 Hb_001515_050--Hb_000045_180 Hb_003439_020--Hb_074312_020 Hb_003439_020--Hb_134017_010 Hb_001862_060 Hb_001862_060 Hb_003439_020--Hb_001862_060 Hb_003439_020--Hb_000255_020 Hb_003439_020--Hb_003430_020 Hb_084127_010 Hb_084127_010 Hb_003439_020--Hb_084127_010 Hb_008406_020 Hb_008406_020 Hb_009581_040--Hb_008406_020 Hb_009581_040--Hb_074312_020 Hb_009581_040--Hb_001862_060 Hb_009581_040--Hb_000255_020 Hb_002276_100 Hb_002276_100 Hb_009581_040--Hb_002276_100 Hb_073171_010 Hb_073171_010 Hb_052764_080--Hb_073171_010 Hb_001259_100 Hb_001259_100 Hb_052764_080--Hb_001259_100 Hb_000977_090 Hb_000977_090 Hb_052764_080--Hb_000977_090 Hb_000429_110 Hb_000429_110 Hb_052764_080--Hb_000429_110 Hb_000720_210 Hb_000720_210 Hb_052764_080--Hb_000720_210 Hb_074312_020--Hb_001862_060 Hb_046101_010 Hb_046101_010 Hb_074312_020--Hb_046101_010 Hb_074312_020--Hb_002276_100 Hb_074312_020--Hb_134017_010 Hb_001369_070 Hb_001369_070 Hb_074312_020--Hb_001369_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.041971 8.75849 0.977629 4.46748 0.0394193 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.292062 0 0.134303 5.95342 1.63517

CAGE analysis