Hb_005188_050

Information

Type -
Description -
Location Contig5188: 44988-54850
Sequence    

Annotation

kegg
ID tcc:TCM_019049
description DNA/RNA polymerases superfamily protein
nr
ID XP_012088094.1
description PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q8L6J3
description DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2
trembl
ID A0A067JXQ4
description DNA-directed RNA polymerase OS=Jatropha curcas GN=JCGZ_25615 PE=3 SV=1
Gene Ontology
ID GO:0005739
description dna-directed rna polymerase chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46628: 46319-47721 , PASA_asmbl_46629: 47916-50300 , PASA_asmbl_46630: 50941-51593 , PASA_asmbl_46631: 51842-53777 , PASA_asmbl_46633: 54420-54732 , PASA_asmbl_46634: 55564-56140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005188_050 0.0 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000827_070 0.0430745171 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_000487_290 0.0445618337 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
4 Hb_002603_120 0.0639214163 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
5 Hb_000803_190 0.0684922596 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
6 Hb_045793_010 0.0715443335 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
7 Hb_000025_360 0.0733345509 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
8 Hb_000421_070 0.073418732 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001595_030 0.073840872 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
10 Hb_004724_060 0.0744701086 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
11 Hb_005245_130 0.0744703152 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
12 Hb_006316_040 0.0754719398 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
13 Hb_005532_050 0.076774316 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_123352_020 0.0771828649 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
15 Hb_002496_030 0.0772042449 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
16 Hb_001677_210 0.0786907627 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
17 Hb_000453_170 0.0799486189 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000629_010 0.0800001938 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
19 Hb_002477_030 0.0800363624 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
20 Hb_120327_010 0.0801198056 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]

Gene co-expression network

sample Hb_005188_050 Hb_005188_050 Hb_000827_070 Hb_000827_070 Hb_005188_050--Hb_000827_070 Hb_000487_290 Hb_000487_290 Hb_005188_050--Hb_000487_290 Hb_002603_120 Hb_002603_120 Hb_005188_050--Hb_002603_120 Hb_000803_190 Hb_000803_190 Hb_005188_050--Hb_000803_190 Hb_045793_010 Hb_045793_010 Hb_005188_050--Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_005188_050--Hb_000025_360 Hb_000827_070--Hb_045793_010 Hb_000827_070--Hb_000487_290 Hb_002477_030 Hb_002477_030 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001736_040 Hb_001736_040 Hb_000827_070--Hb_001736_040 Hb_123352_020 Hb_123352_020 Hb_000487_290--Hb_123352_020 Hb_005731_030 Hb_005731_030 Hb_000487_290--Hb_005731_030 Hb_000487_290--Hb_000025_360 Hb_004724_060 Hb_004724_060 Hb_000487_290--Hb_004724_060 Hb_000853_420 Hb_000853_420 Hb_002603_120--Hb_000853_420 Hb_001595_030 Hb_001595_030 Hb_002603_120--Hb_001595_030 Hb_000030_300 Hb_000030_300 Hb_002603_120--Hb_000030_300 Hb_000629_010 Hb_000629_010 Hb_002603_120--Hb_000629_010 Hb_004491_010 Hb_004491_010 Hb_002603_120--Hb_004491_010 Hb_004734_060 Hb_004734_060 Hb_000803_190--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_000803_190--Hb_033152_080 Hb_000953_010 Hb_000953_010 Hb_000803_190--Hb_000953_010 Hb_001797_050 Hb_001797_050 Hb_000803_190--Hb_001797_050 Hb_000207_390 Hb_000207_390 Hb_000803_190--Hb_000207_390 Hb_045793_010--Hb_000025_360 Hb_076693_020 Hb_076693_020 Hb_045793_010--Hb_076693_020 Hb_006847_040 Hb_006847_040 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59781 6.58404 3.27375 2.19695 7.96972 8.61066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27027 6.18541 6.45107 5.07571 2.87939

CAGE analysis