Hb_005188_060

Information

Type -
Description -
Location Contig5188: 55397-59890
Sequence    

Annotation

kegg
ID rcu:RCOM_0196830
description Protein bem46, putative
nr
ID XP_012088096.1
description PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
swissprot
ID Q7ZVZ7
description Alpha/beta hydrolase domain-containing protein 17C OS=Danio rerio GN=abhd17c PE=2 SV=1
trembl
ID A0A067JWE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25616 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase domain-containing protein 17b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46634: 55564-56140 , PASA_asmbl_46635: 57847-58173 , PASA_asmbl_46636: 59455-59840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005188_060 0.0 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
2 Hb_007943_120 0.0465275445 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
3 Hb_005883_010 0.0551802009 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003680_230 0.0678467363 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
5 Hb_000140_330 0.0702311308 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
6 Hb_007229_040 0.072275651 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
7 Hb_004635_050 0.074036407 - - nucleolar phosphoprotein, putative [Ricinus communis]
8 Hb_006452_160 0.0745638634 - - structural constituent of ribosome, putative [Ricinus communis]
9 Hb_000753_100 0.0768688438 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
10 Hb_001117_190 0.0787569592 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
11 Hb_028872_120 0.0790146494 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
12 Hb_000116_060 0.0801078314 - - plant ubiquilin, putative [Ricinus communis]
13 Hb_005539_190 0.0808105284 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
14 Hb_003633_070 0.0821537673 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
15 Hb_003540_160 0.0823644642 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
16 Hb_080147_040 0.0828919066 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
17 Hb_002157_260 0.0836325375 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
18 Hb_001771_120 0.0845280105 - - K+ transport growth defect-like protein [Hevea brasiliensis]
19 Hb_010738_010 0.084546627 - - PREDICTED: B2 protein [Jatropha curcas]
20 Hb_000320_380 0.0848943483 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005188_060 Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_005188_060--Hb_007943_120 Hb_005883_010 Hb_005883_010 Hb_005188_060--Hb_005883_010 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_000140_330 Hb_000140_330 Hb_005188_060--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005188_060--Hb_007229_040 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_007943_120--Hb_005883_010 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_007943_120--Hb_004635_050 Hb_007943_120--Hb_003680_230 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_005883_010--Hb_000140_330 Hb_005883_010--Hb_007229_040 Hb_007558_120 Hb_007558_120 Hb_003680_230--Hb_007558_120 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_006816_050 Hb_006816_050 Hb_003680_230--Hb_006816_050 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050 Hb_000140_330--Hb_007943_120 Hb_000406_240 Hb_000406_240 Hb_000140_330--Hb_000406_240 Hb_006452_160 Hb_006452_160 Hb_000140_330--Hb_006452_160 Hb_000368_020 Hb_000368_020 Hb_000140_330--Hb_000368_020 Hb_140049_020 Hb_140049_020 Hb_007229_040--Hb_140049_020 Hb_001117_190 Hb_001117_190 Hb_007229_040--Hb_001117_190 Hb_000320_380 Hb_000320_380 Hb_007229_040--Hb_000320_380 Hb_007229_040--Hb_007943_120 Hb_004635_050--Hb_007558_120 Hb_033883_060 Hb_033883_060 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7822 23.201 18.3524 7.94909 26.9994 20.1788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.59319 8.3241 10.2061 8.66054 8.54935

CAGE analysis