Hb_005194_020

Information

Type -
Description -
Location Contig5194: 57443-63195
Sequence    

Annotation

kegg
ID cit:102609044
description UPF0553 protein-like
nr
ID XP_012079382.1
description PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
swissprot
ID Q54II8
description UPF0553 protein OS=Dictyostelium discoideum GN=DDB_G0288723 PE=3 SV=1
trembl
ID A0A067KJP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46649: 57460-63369 , PASA_asmbl_46650: 59242-59416 , PASA_asmbl_46651: 59799-60045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005194_020 0.0 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
2 Hb_000979_060 0.0939742518 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
3 Hb_000951_100 0.101300016 - - PREDICTED: uncharacterized protein LOC103436565 isoform X1 [Malus domestica]
4 Hb_004635_030 0.1020751208 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
5 Hb_002311_480 0.1116198843 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
6 Hb_011671_310 0.1132385347 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
7 Hb_001005_020 0.1168102127 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
8 Hb_000169_080 0.1196477943 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
9 Hb_001277_280 0.1213883592 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
10 Hb_000579_190 0.1226490831 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
11 Hb_000173_310 0.1262892561 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
12 Hb_000959_220 0.1295472094 - - zinc finger protein, putative [Ricinus communis]
13 Hb_001322_020 0.129824187 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
14 Hb_004724_220 0.1298882188 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
15 Hb_002284_150 0.1303187791 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
16 Hb_003213_010 0.1305280093 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
17 Hb_004648_090 0.1316804864 - - peroxisomal biogenesis factor, putative [Ricinus communis]
18 Hb_000291_030 0.1320198522 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
19 Hb_006538_130 0.1322023666 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
20 Hb_000375_290 0.134211645 - - DAG protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005194_020 Hb_005194_020 Hb_000979_060 Hb_000979_060 Hb_005194_020--Hb_000979_060 Hb_000951_100 Hb_000951_100 Hb_005194_020--Hb_000951_100 Hb_004635_030 Hb_004635_030 Hb_005194_020--Hb_004635_030 Hb_002311_480 Hb_002311_480 Hb_005194_020--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_005194_020--Hb_011671_310 Hb_001005_020 Hb_001005_020 Hb_005194_020--Hb_001005_020 Hb_000684_100 Hb_000684_100 Hb_000979_060--Hb_000684_100 Hb_000979_060--Hb_002311_480 Hb_000009_220 Hb_000009_220 Hb_000979_060--Hb_000009_220 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000579_190 Hb_000579_190 Hb_000979_060--Hb_000579_190 Hb_000169_080 Hb_000169_080 Hb_000951_100--Hb_000169_080 Hb_000081_010 Hb_000081_010 Hb_000951_100--Hb_000081_010 Hb_001124_010 Hb_001124_010 Hb_000951_100--Hb_001124_010 Hb_004096_180 Hb_004096_180 Hb_000951_100--Hb_004096_180 Hb_000951_100--Hb_011671_310 Hb_002478_040 Hb_002478_040 Hb_004635_030--Hb_002478_040 Hb_006538_130 Hb_006538_130 Hb_004635_030--Hb_006538_130 Hb_008695_090 Hb_008695_090 Hb_004635_030--Hb_008695_090 Hb_000291_030 Hb_000291_030 Hb_004635_030--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_004635_030--Hb_001477_070 Hb_001500_120 Hb_001500_120 Hb_002311_480--Hb_001500_120 Hb_002311_480--Hb_011671_310 Hb_005977_030 Hb_005977_030 Hb_002311_480--Hb_005977_030 Hb_004943_030 Hb_004943_030 Hb_002311_480--Hb_004943_030 Hb_000048_080 Hb_000048_080 Hb_002311_480--Hb_000048_080 Hb_011671_310--Hb_001500_120 Hb_011671_310--Hb_005977_030 Hb_011671_310--Hb_001005_020 Hb_001761_120 Hb_001761_120 Hb_011671_310--Hb_001761_120 Hb_007290_030 Hb_007290_030 Hb_011671_310--Hb_007290_030 Hb_000207_200 Hb_000207_200 Hb_001005_020--Hb_000207_200 Hb_001005_020--Hb_000579_190 Hb_002909_040 Hb_002909_040 Hb_001005_020--Hb_002909_040 Hb_000352_350 Hb_000352_350 Hb_001005_020--Hb_000352_350 Hb_009449_060 Hb_009449_060 Hb_001005_020--Hb_009449_060 Hb_001005_020--Hb_007290_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3168 33.1039 60.4616 18.1088 17.5357 14.2749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0919 22.0163 21.5987 7.42337 12.4304

CAGE analysis